Organizer: de.NBI

Start: Monday, 16 November 2020 @ 10:00

End: Monday, 16 November 2020 @ 11:30

Description:

Educators:
Uwe Scholz (GCBN), Sebastian Beier (GCBN)

Date:
16th November 2020, 10:00 a.m. – 11:30 a.m.

Location:
Online

Contents:
Complex plant genomes impose high demands on analytical software and the knowledge of biologists to interpret these results. The service centre GCBN offers CATS (Crop Analysis Tool Suite), which provides various tools for sequence analysis. In this first of three courses the main focus is on the operation of the BLAST Server and the integration with BARLEX (Barley Genome Explorer). There will be two short presentations on the two topics and two online live demonstrations with examples. Together the whole training course will last about 90 minutes.

Learning goals:
The primary objective of this training course is to introduce tools for sequence analysis for crops (in particular barley). The theoretical basics as well as some examples will be shown by using online demonstrations, which will enable the participants to design and perform their own analyses.

Prerequisites:
The training course is designed for early career scientists such as PhD students and postdocs, but also for experienced scientists who want to learn more about the analysis and handling of sequence data for complex plant genomes like barley.

Keywords:
Sequence analysis, genomics, transcriptomics, annotation, Morex v2 assembly

Tools:
IPK WebBlast - https://webblast.ipk-gatersleben.de/barley_ibsc/
BARLEX - http://barlex.barleysequence.org/

Event type:
  • Workshops and courses
de.NBI Crop Analysis Tool Suite (Part I) training course – Explore the barley genome https://tess.elixir-europe.org/events/de-nbi-crop-analysis-tool-suite-part-i-training-course-explore-the-barley-genome Educators: Uwe Scholz (GCBN), Sebastian Beier (GCBN) Date: 16th November 2020, 10:00 a.m. – 11:30 a.m. Location: Online Contents: Complex plant genomes impose high demands on analytical software and the knowledge of biologists to interpret these results. The service centre GCBN offers CATS (Crop Analysis Tool Suite), which provides various tools for sequence analysis. In this first of three courses the main focus is on the operation of the BLAST Server and the integration with BARLEX (Barley Genome Explorer). There will be two short presentations on the two topics and two online live demonstrations with examples. Together the whole training course will last about 90 minutes. Learning goals: The primary objective of this training course is to introduce tools for sequence analysis for crops (in particular barley). The theoretical basics as well as some examples will be shown by using online demonstrations, which will enable the participants to design and perform their own analyses. Prerequisites: The training course is designed for early career scientists such as PhD students and postdocs, but also for experienced scientists who want to learn more about the analysis and handling of sequence data for complex plant genomes like barley. Keywords: Sequence analysis, genomics, transcriptomics, annotation, Morex v2 assembly Tools: IPK WebBlast - https://webblast.ipk-gatersleben.de/barley_ibsc/ BARLEX - http://barlex.barleysequence.org/ 2020-11-16 10:00:00 UTC 2020-11-16 11:30:00 UTC de.NBI [] [] [] workshops_and_courses [] []