Organizer: de.NBI

Start: Monday, 16 September 2019 @ 09:00

End: Monday, 16 September 2019 @ 17:00

Venue: Heidelberg

City: Heidelberg

County: Karlsruhe

Country: Germany

Description:

Educators:
Björn Grüning (RBC), Wolfgang Müller (de.NBI-SysBio)

Date:
16.09.2019

Location:
Marsilius-Arkaden
Turm West, Room K13
Im Neuenheimer Feld 6.130.3
69120 Heidelberg
Germany

Contents:
There is a huge call towards FAIR data. However, what is FAIR? Many of us know how that FAIR means Findable, Accessible, Interoperable, Reusable. However the questions "How do I achieve FAIR?" and "How FAIR is FAIR enough?" are still open to debate.

A completely different discussion is: How do I approach making my data FAIR? Making data FAIR can be tedious, manual work.

Within this workshop we will demonstrate another approach, i.e. using the workflow system Galaxy, as well as Jupyter Notebooks to extract, enrich, process, and finally upload data into the FAIRDOMHub. This is built around the example use case of building an age estimator for humans from RNA data.

On the way, we will give reference to the software and services we provide and the type of advice that we can give.

Keywords:
FAIR data, Galaxy, Jupyter Notebooks, FAIRDOMHub

Tools:
Galaxy, Jupyter Notebooks, FAIRDOMHub

Prerequisites:
None

Event type:
  • Meetings and conferences
Combining Workflows, Tools and Data Management - GCB 2019 https://tess.elixir-europe.org/events/combining-workflows-tools-and-data-management-gcb-2019 Educators: Björn Grüning (RBC), Wolfgang Müller (de.NBI-SysBio) Date: 16.09.2019 Location: Marsilius-Arkaden Turm West, Room K13 Im Neuenheimer Feld **6.130.3** 69120 Heidelberg Germany Contents: There is a huge call towards FAIR data. However, what is *FAIR*? Many of us know how that FAIR means Findable, Accessible, Interoperable, Reusable. However the questions "How do I achieve FAIR?" and "How FAIR is FAIR enough?" are still open to debate. A completely different discussion is: How do I approach making my data FAIR? Making data FAIR can be tedious, manual work. Within this workshop we will demonstrate another approach, i.e. using the workflow system Galaxy, as well as Jupyter Notebooks to extract, enrich, process, and finally upload data into the FAIRDOMHub. This is built around the example use case of building an age estimator for humans from RNA data. On the way, we will give reference to the software and services we provide and the type of advice that we can give. Keywords: FAIR data, Galaxy, Jupyter Notebooks, FAIRDOMHub Tools: Galaxy, Jupyter Notebooks, FAIRDOMHub Prerequisites: None 2019-09-16 09:00:00 UTC 2019-09-16 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] meetings_and_conferences [] []