Organizer: de.NBI

Start: Monday, 12 August 2019 @ 14:00

End: Monday, 12 August 2019 @ 17:00

Venue: Riga

City: Riga

Country: Latvia

Description:

Educators:
Axel von Kamp, Philipp Schneider, Steffen Klamt (de.NBI-SysBio)

Date:
Monday, 12th of August 14:00 - 17:30

Location:
Riga, Lativa, MPA Conference

Contents:
CellNetAnalyzer (CNA) is a MATLAB package for analyzing biological (metabolic, signaling and regulatory) networks and supports both command-line based operations as well as a graphical user interface with embedded network visualizations. In the first part of the tutorial (1,5h) we will demonstrate key features of CNA for stoichiometric and constraint-based modeling of metabolic networks (including flux (balance) analysis, flux and yield optimization, elementary mode analysis, computational strain design with minimal cut sets and others). The second part of the tutorial (1,5h) will consist of hands-on exercises where the participants will learn how to use CellNetAnalyzer in practice..

Prerequisites:
Some knowledge of mathematical modeling will be advantageous.
The participants should bring their own laptop with MATLAB installed (if you do not have MATLAB please let us know during registration).
Download and preinstallation of CellNetAnalyzer is recommended but not mandatory.

Keywords:
CellNetAnalyzer (CNA), SBML, modeling, kinetic data access,

Tools:
CellNetAnalyzer

Event type:
  • Meetings and conferences
Analyzing metabolic networks with CellNetAnalyzer - MPA https://tess.elixir-europe.org/events/analyzing-metabolic-networks-with-cellnetanalyzer-mpa Educators: Axel von Kamp, Philipp Schneider, Steffen Klamt (de.NBI-SysBio) Date: Monday, 12th of August 14:00 - 17:30 Location: Riga, Lativa, MPA Conference Contents: CellNetAnalyzer (CNA) is a MATLAB package for analyzing biological (metabolic, signaling and regulatory) networks and supports both command-line based operations as well as a graphical user interface with embedded network visualizations. In the first part of the tutorial (1,5h) we will demonstrate key features of CNA for stoichiometric and constraint-based modeling of metabolic networks (including flux (balance) analysis, flux and yield optimization, elementary mode analysis, computational strain design with minimal cut sets and others). The second part of the tutorial (1,5h) will consist of hands-on exercises where the participants will learn how to use CellNetAnalyzer in practice.. Prerequisites: Some knowledge of mathematical modeling will be advantageous. The participants should bring their own laptop with MATLAB installed (if you do not have MATLAB please let us know during registration). Download and preinstallation of CellNetAnalyzer is recommended but not mandatory. Keywords: CellNetAnalyzer (CNA), SBML, modeling, kinetic data access, Tools: CellNetAnalyzer 2019-08-12 14:00:00 UTC 2019-08-12 17:00:00 UTC de.NBI Riga, Riga, Latvia Riga Riga Latvia [] [] [] meetings_and_conferences [] []