Organizer: de.NBI

Start: Tuesday, 16 July 2019 @ 09:00

End: Tuesday, 16 July 2019 @ 17:00

Venue: Hamburg

City: Hamburg

Country: Germany

Description:

Educators:
Malik Alawi (UKE), Ceren Saygi (UKE) (External Partner)

Date:
16th July 2019

Location:
Center for Bioinformatics Hamburg, Bundesstrasse 43, 20146 Hamburg, Room 18

Contents:
- Short introduction to ChIP and sequencing
- Quality assessment and control of sequence reads
- Aligning reads to a reference assembly (mapping)
- Peak calling
- Associating peaks with genes and other genomic features (peak annotation)
- Visualization
- Motif detection

Learning goals:
Hands-on exercises performed during this one-day workshop will enable participants to perform ChIP-seq data analyses on the Linux command line.

Prerequisites:
A basic understanding of the Linux command line and the (biological) ChIP-seq method are required to attend this course.

Keywords:
Chip-seq, Chipseq

Tools:
Fastqc, trimmomatic, bowtie, macs2, homer, igv

Event type:
  • Workshops and courses
An Introduction to ChIP-seq Data Analysis https://tess.elixir-europe.org/events/an-introduction-to-chip-seq-data-analysis Educators: Malik Alawi (UKE), Ceren Saygi (UKE) (External Partner) Date: 16th July 2019 Location: Center for Bioinformatics Hamburg, Bundesstrasse 43, 20146 Hamburg, Room 18 Contents: - Short introduction to ChIP and sequencing - Quality assessment and control of sequence reads - Aligning reads to a reference assembly (mapping) - Peak calling - Associating peaks with genes and other genomic features (peak annotation) - Visualization - Motif detection Learning goals: Hands-on exercises performed during this one-day workshop will enable participants to perform ChIP-seq data analyses on the Linux command line. Prerequisites: A basic understanding of the Linux command line and the (biological) ChIP-seq method are required to attend this course. Keywords: Chip-seq, Chipseq Tools: Fastqc, trimmomatic, bowtie, macs2, homer, igv 2019-07-16 09:00:00 UTC 2019-07-16 17:00:00 UTC de.NBI Hamburg, Hamburg, Germany Hamburg Hamburg Germany [] [] [] workshops_and_courses [] []