Content Providers
Keywords: ELSI or Jalview or Kinetic modeling or Machine Learning or Multiple sequence analysis or Semantic interoperability or data center
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CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
OpenRiskNet
The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials.
OpenRiskNet is
* a virtual research environment for...0 events (10 past events)OpenRiskNet https://openrisknet.org/ https://tess.elixir-europe.org/content_providers/openrisknet The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is * a virtual research environment for predictive toxicology and chemical and nanomaterial risk assessment, * harmonising access to data and facilitating interoperability of software, * easily deployable to single computers, public and in-house cloud solutions, * addressing the needs of industry and academic researchers, risk assessors, regulators and informed public. OpenRiskNet (Grant Agreement 731075) is a 3-years project funded by the European Commission within the Horizon2020 Programme /system/content_providers/images/000/000/097/original/ORN-Web_Logo3.png?1533933310 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
8 training materials0 events (9 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
proteomicsML
ProteomicsML provides ready-made datasets for machine learning models accompanied by tutorials on how to work with even the most complex data types in the field of proteomics. The resource is set up to evolve together with the field, and we welcome everyone to contribute to the project by adding...
1 training materialproteomicsML https://proteomicsml.org/ https://tess.elixir-europe.org/content_providers/proteomicsml ProteomicsML provides ready-made datasets for machine learning models accompanied by tutorials on how to work with even the most complex data types in the field of proteomics. The resource is set up to evolve together with the field, and we welcome everyone to contribute to the project by adding new datasets and accompanying notebooks. ProteomicsML was set up as a joint effort of SDU, CompOmics, LUMC, PeptideAtlas, NIST, PRIDE, and MSAID. We believe that ProteomicsML is solid step forward for the field towards more open and reproducible science! /system/content_providers/images/000/000/676/original/proteomicsml-logo.png?1686658675 -
Jalview
An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation.
Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded...
Jalview https://www.jalview.org https://tess.elixir-europe.org/content_providers/jalview-658bf3af-3cd2-4ae1-a832-18910e04cf57 An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation. Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded and coordinated by the [Barton Group](https://www.compbio.dundee.ac.uk), part of the [School of Life Science's Division of Computational Biology](https://www.dundee.ac.uk/life-sciences/research/computational-biology) at the University of Dundee in Scotland, UK. /system/content_providers/images/000/000/685/original/jalview_logoytype.png?1695106439