Content Providers
Keywords: Bioinformatics tools or Containers or Galaxy or Phylogenetic trees or Proteomics or Text Mining or birmingham or infrastructure or life-sciences or metabolome or open science or science
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Seqera Labs
Founded by the creators of Nextflow, Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem.
We organize training events for your team or organization. These are intended for...
0 events (1 past event)Seqera Labs http://www.seqera.io https://tess.elixir-europe.org/content_providers/seqera-labs Founded by the creators of [Nextflow](http://www.nextflow.io), Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem. We organize training events for your team or organization. These are intended for anyone who wishes to learn about the technology, starting from basic through to advanced concepts. Our most popular intensive two-day course includes topics on containerization, cloud deployment, Git integration and best practices for reproducibility. /system/content_providers/images/000/000/111/original/Seqera_Labs_-_grey.png?1553771707 -
proteomicsML
ProteomicsML provides ready-made datasets for machine learning models accompanied by tutorials on how to work with even the most complex data types in the field of proteomics. The resource is set up to evolve together with the field, and we welcome everyone to contribute to the project by adding...
1 training materialproteomicsML https://proteomicsml.org/ https://tess.elixir-europe.org/content_providers/proteomicsml ProteomicsML provides ready-made datasets for machine learning models accompanied by tutorials on how to work with even the most complex data types in the field of proteomics. The resource is set up to evolve together with the field, and we welcome everyone to contribute to the project by adding new datasets and accompanying notebooks. ProteomicsML was set up as a joint effort of SDU, CompOmics, LUMC, PeptideAtlas, NIST, PRIDE, and MSAID. We believe that ProteomicsML is solid step forward for the field towards more open and reproducible science! /system/content_providers/images/000/000/676/original/proteomicsml-logo.png?1686658675 -
H3ABioNet
H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium.
H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet...0 events (1 past event)H3ABioNet https://h3abionet.org https://tess.elixir-europe.org/content_providers/h3abionet H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium. H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet is developing human capacity through training and support for data analysis, and facilitating access to informatics infrastructure by developing or providing access to pipelines and tools for human, microbiome and pathogen genomic data analysis. /system/content_providers/images/000/000/803/original/LOGO-HEADER-2.png?1726047187 -
University of Ljubljana, Faculty of Medicine
Faculty of Medicine is part of University of Ljubljana, the oldest and largest institution of higher education in Slovenia. The faculty carries out research and provides training in the fields of medicine, dental medicine and life sciences.
University of Ljubljana, Faculty of Medicine https://www.mf.uni-lj.si/en https://tess.elixir-europe.org/content_providers/university-of-ljubljana-faculty-of-medicine Faculty of Medicine is part of University of Ljubljana, the oldest and largest institution of higher education in Slovenia. The faculty carries out research and provides training in the fields of medicine, dental medicine and life sciences. /system/content_providers/images/000/000/104/original/mf-znal.png?1539848321 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557 -
Jalview
An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation.
Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded...
Jalview https://www.jalview.org https://tess.elixir-europe.org/content_providers/jalview-658bf3af-3cd2-4ae1-a832-18910e04cf57 An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation. Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded and coordinated by the [Barton Group](https://www.compbio.dundee.ac.uk), part of the [School of Life Science's Division of Computational Biology](https://www.dundee.ac.uk/life-sciences/research/computational-biology) at the University of Dundee in Scotland, UK. /system/content_providers/images/000/000/685/original/jalview_logoytype.png?1695106439
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