Content Providers
Keywords: Amazon Web Services or Containerization or Data Analysis or Data management or Gene Expression or Phylogenetic trees or modelling
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BioExcel
BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. BioExcel develops some of the most popular open-source applications for modelling and simulations of biomolecular systems along with user-friendly workflows and container solutions. The software stack...
5 events (12 past events)BioExcel http://bioexcel.eu/ https://tess.elixir-europe.org/content_providers/bioexcel BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. BioExcel develops some of the most popular open-source applications for modelling and simulations of biomolecular systems along with user-friendly workflows and container solutions. The software stack comes with great performance and scalability capabilities for extreme-scale utilization of the world's largest high-performance computing (HPC) and high-throughput computing (HTC) compute resource. /system/content_providers/images/000/000/053/original/BioExcel_logo_payoff.png?1470306206 -
PerMedCoE
PerMedCoE is the HPC/Exascale Centre of Excellence for Personalised Medicine in Europe.
12 training materialsPerMedCoE https://permedcoe.eu https://tess.elixir-europe.org/content_providers/permedcoe PerMedCoE is the HPC/Exascale Centre of Excellence for Personalised Medicine in Europe. /system/content_providers/images/000/000/637/original/LOGO_PerMedCoE.jpg?1636473064 -
OpenRiskNet
The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials.
OpenRiskNet is
* a virtual research environment for...0 events (10 past events)OpenRiskNet https://openrisknet.org/ https://tess.elixir-europe.org/content_providers/openrisknet The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is * a virtual research environment for predictive toxicology and chemical and nanomaterial risk assessment, * harmonising access to data and facilitating interoperability of software, * easily deployable to single computers, public and in-house cloud solutions, * addressing the needs of industry and academic researchers, risk assessors, regulators and informed public. OpenRiskNet (Grant Agreement 731075) is a 3-years project funded by the European Commission within the Horizon2020 Programme /system/content_providers/images/000/000/097/original/ORN-Web_Logo3.png?1533933310 -
Centre for Genomic Regulation (CRG)
The CRG is an international biomedical research institute of excellence whose mission is to discover and advance knowledge for the benefit of society, public health and economic prosperity.
4 training materials0 events (2 past events)Centre for Genomic Regulation (CRG) https://www.crg.eu https://tess.elixir-europe.org/content_providers/centre-for-genomic-regulation-crg The CRG is an international biomedical research institute of excellence whose mission is to discover and advance knowledge for the benefit of society, public health and economic prosperity. /system/content_providers/images/000/000/647/original/LOGOs-CRG-ENG_2014.jpg?1659436926 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
Seqera Labs
Founded by the creators of Nextflow, Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem.
We organize training events for your team or organization. These are intended for...
0 events (1 past event)Seqera Labs http://www.seqera.io https://tess.elixir-europe.org/content_providers/seqera-labs Founded by the creators of [Nextflow](http://www.nextflow.io), Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem. We organize training events for your team or organization. These are intended for anyone who wishes to learn about the technology, starting from basic through to advanced concepts. Our most popular intensive two-day course includes topics on containerization, cloud deployment, Git integration and best practices for reproducibility. /system/content_providers/images/000/000/111/original/Seqera_Labs_-_grey.png?1553771707 -
Cloud-SPAN
Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project:
- Prenomics
- Genomics
- Create your own AWS...1 training materialCloud-SPAN https://cloud-span.york.ac.uk/ https://tess.elixir-europe.org/content_providers/cloud-span Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project: - Prenomics - Genomics - Create your own AWS instance - Metagenomics - Statistically useful experimental design - Automation & pipelines (WIP) - Core R (WIP) /system/content_providers/images/000/000/658/original/cloud-span-logo-square.png?1666085149 -
Fraunhofer FIT
As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT...
1 training materialFraunhofer FIT https://www.fit.fraunhofer.de/en.html https://tess.elixir-europe.org/content_providers/fraunhofer-fit As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT not only provides guidance, but also shapes the digital transformation in business, the environment and society. FIT’s interdisciplinary R&D teams are drawn from our staff of around 350 scientists from computer science, social science, business administration, economics, psychology, and engineering. They bring their expertise in designing and implementing information technology systems to bear on problems and needs from different areas of life. Our specific strength is our holistic approach to system development – from concept validation to implementation. We strategically evolve our expertise in IT, specific application fields, and our scientific excellence with the aim to be ahead of the market for our customers from industry and administration. /system/content_providers/images/000/000/661/original/fit.svg?1670846086 -
German Human Genome Phenome Archive (GHGA)
1 event (1 past event)German Human Genome Phenome Archive (GHGA) https://www.ghga.de/ https://tess.elixir-europe.org/content_providers/german-human-genome-phenome-archive-ghga /system/content_providers/images/000/000/695/original/GHGA_full_Logo_orange_.png?1700149933 -
Jalview
An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation.
Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded...
Jalview https://www.jalview.org https://tess.elixir-europe.org/content_providers/jalview-658bf3af-3cd2-4ae1-a832-18910e04cf57 An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation. Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded and coordinated by the [Barton Group](https://www.compbio.dundee.ac.uk), part of the [School of Life Science's Division of Computational Biology](https://www.dundee.ac.uk/life-sciences/research/computational-biology) at the University of Dundee in Scotland, UK. /system/content_providers/images/000/000/685/original/jalview_logoytype.png?1695106439