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1
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Data filtering genomics Proteomics transcriptomics … -
2
Jupyter notebook
BpForms tutorial
•• intermediateEpigenomics Transcriptomics Proteomics Protein modifications Systems biology Validation RNA modification protein modification DNA repair DNA damage … -
3
Jupyter notebook
BcForms tutorial
•• intermediateProteomics Protein modifications Systems biology Validation BiologicalMacromolecules protein complex macromolecular complex crosslink modification -
4
WEBINAR: KBase - A knowledge base for systems biology
Systems Biology FAIR Research Open Source Software Metagenomics Microbiology
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5
Course materials
Systems biology: from large datasets to biological insight materials
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6
Recorded webinar
Reproducibility in Systems Biology Modelling: BioModels' role
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7
Online material, Recording, hands-on tutorial
MaBoSS: a tool for modelling biological systems
• beginnerMathematical modelling cancer Signalling boolean modelling logical modelling -
8
Recorded webinar
Exploring reproducible and reusable systems biology models with BioModels
Biomolecular simulation
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9
Training Workshop for Stress Knowledge Map
Plant biology networks and pathways Systems Biology Plant research plant science
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1Workshops and courses
Systems biology: from large datasets to biological insight
11 - 15 May 2026
United Kingdom
Face-to-face
Systems biology Network analysis Machine learning Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
2Workshops and courses
Dynamic Modeling in Systems Biology (Fundamental) 2025
8 - 12 December 2025
Wageningen, Wageningen
Face-to-face
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3Workshops and courses
Constraint-based modeling and design of metabolic networks with CellNetAnalyzer and CNApy 2025
4 - 5 November 2025
Online
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4Workshops and courses
Advanced Modelling with COPASI 2025
10 October 2025 @ 09:30 - 16:00
Heidelberg, Germany
Face-to-face
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5Workshops and courses
Methods for infectious disease modelling using genomics
14 - 19 September 2025
United Kingdom
Face-to-face
Modelling and simulation Infectious disease Phylogenetic analysis Genomics Public health and epidemiology infectious diseases mathematical modelling genomics phylodynamics public health -
6Workshops and courses
Systems biology: from large datasets to biological insight
7 - 11 July 2025
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
7Workshops and courses
Algorithms for Biomolecular Networks (2025)
28 April - 2 May 2025
University of Amsterdam, Science Park (building Lab42)
Face-to-face
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8Workshops and courses
Omics Integration and Systems Biology
14 - 18 October 2024
Online
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9
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10
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11
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12
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13Workshops and courses
BiG Talks
10 September 2021 @ 09:00 - 17:00
Metabolic Atlas: Genome-scale metabolic models for easy browsing and analysis. Mihail Anton https://www.youtube.com/live/HJQGvmyko8I?si=D97Q0usKe5ACOyAZ
Face-to-face
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14Workshops and courses
BiG Talks
10 September 2021 @ 09:00 - 17:00
Network-based integration and visualization of large-scale data. Lars Juhl Jensen https://www.youtube.com/live/HJQGvmyko8I?si=zbxIpQ2HPB1CpAeT&t=3551
Face-to-face
Activity log
