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Showing 11 events
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Workshops and courses
Research Data Management: your ally on the way to your publication
13 - 14 November 2023
Leuven, Belgium
Face-to-face
hands-on research data management ELIXIR -
Workshops and courses
What shall we do with our agricultural research data? - 1001 reasons for a Data Management Plan
21 November 2023 @ 09:00 - 13:00
Online
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Introduction to Research Data Management - Getting started with Data Management and Data Stewardship
7 November 2023
Face-to-face
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Workshops and courses
GHGA Webinar: Intro to the Data Stewardship Wizard & ELIXIR Research Data Management Kit - with de.NBI
19 October 2023 @ 14:00 - 15:00
Online
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Workshops and courses
Introduction to Data Management Practices
17 - 19 October 2023
Uppsala, Göteborg, Sweden
Face-to-face
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Meetings and conferences
FAIRDOM User Meeting 10/2023
16 October 2023 @ 14:00 - 16:00
Online
Data management -
Version Control with Git
2 - 4 October 2023
Lausanne, Switzerland
Face-to-face
programming reproducibility data management -
Workshops and courses
Nextflow for reproducible and automated data analysis
16 - 17 November 2023
Zwijnaarde, Belgium
Face-to-face
advanced bioinformatics research data management programming ELIXIR -
Workshops and courses
Docker and Singularity (Apptainer) for reproducible and automated data analysis
12 - 13 October 2023
Brussel, Belgium
Face-to-face
advanced bioinformatics research data management programming ELIXIR -
Docker and Singularity for Reproducible Research: Getting Started with Containers
13 October 2023
Online
reproducibility training container data management data security high-performance computing rémy bruggmann group
Showing 30 materials
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Metadata Registry
FAIRsharing Educational Material
• beginnerDatabases Standards Data Policies FAIR -
Course materials
Research Data Management -course
• beginnerRDM research data management data management CONVERGE -
Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management data stewardship data management plan FAIR data management software tools DMP templates template development -
Slides
Data Management Planning workshop for new Life Science Projects
• beginnerData management Deposition Data handling Data retrieval data management plan NeLS TSD metadata sensitive data publication data protection storage identifiers DMP licensing Compliance data life cycle - collect data life cycle - reuse data life cycle - analyse data life cycle - process data life cycle - preserve data life cycle - share data life cycle - plan -
course materials
Introduction to Persistent Identifiers
•• intermediateData management system relevant metadata for data PID metadata Python API pyhandle Persistent Identifiers -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data -
Video, Slides, Webinar
A Gentle Introduction to DSW for Convergers
• beginnerData management Data governance Data managment plan data stewardship data management software tools -
Video, Webinar
ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard
Data management data management plan data stewardship FAIR data management software tools
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Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
lessons, e-learning
Introduction to Data Management Practices - Data Management Plans
• beginnerData management FAIR data Open science CONVERGE Data Stewardship Wizard Data management plan -
e-learning
Data Management and Writing a Data Management Plan
• beginnerData management -
Introduction to FAIR Research Data Management & Data Management Plan
• beginnertraining reproducibility data management data security open data mark ibberson group -
Video, E-Learning
SPHN Schema Forge: How to automatically generate semantic artefacts from the SPHN Dataset Template
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Presentation
Introduction to FAIR principles
• beginnerFAIR data -
Presentation
Data Management Planning
• beginnerData management plan -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR Standards Ontology SNOMED CT LOINC ATC CHOP ICD Interoperability -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Editing Ontology visualisation Visualisation Data handling Clinical data Data semantics FAIR Ontology editing Protegé RDF OWL -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability -
PDF, slideck/ presentation
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
• beginnerData management FAIR data ELIXIR-CONVERGE DMP DMP tools DMP templates DMP evaluation Data managment plan research data management FAIR principles tools template competency evaluation online e-learning Spanish -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
Series of videos, Video, youtube video
Introduction to research data management, data management planning and services provided by CSC – IT Center for Science
• beginnerDMP RDM plan research data management data management data management plan ELIXIR-CONVERGE CONVERGE -
Presentation
Data Management Plans
Data management planning
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lessons
AKKI andmehalduse seminar
• beginnerData management Data management plan -
e-learning
Online course 'Learn to write your Data Management Plan'
• beginnerData management plan data management
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Showing 7 content providers
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ELIXIR Norway
2 training materials0 events (15 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
Fraunhofer FIT
As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT...
1 training materialFraunhofer FIT https://www.fit.fraunhofer.de/en.html https://tess.elixir-europe.org/content_providers/fraunhofer-fit As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT not only provides guidance, but also shapes the digital transformation in business, the environment and society. FIT’s interdisciplinary R&D teams are drawn from our staff of around 350 scientists from computer science, social science, business administration, economics, psychology, and engineering. They bring their expertise in designing and implementing information technology systems to bear on problems and needs from different areas of life. Our specific strength is our holistic approach to system development – from concept validation to implementation. We strategically evolve our expertise in IT, specific application fields, and our scientific excellence with the aim to be ahead of the market for our customers from industry and administration. /system/content_providers/images/000/000/661/original/fit.svg?1670846086 -
FAIRDOM
Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology.
1 training material0 events (2 past events)FAIRDOM https://fair-dom.org/ https://tess.elixir-europe.org/content_providers/fairdom Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology. /system/content_providers/images/000/000/100/original/Screen_Shot_2018-09-06_at_15.54.17.png?1536245244 -
ELXIR-UK DaSH
In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford.
The project aims to embed Research Data...
47 training materialsELXIR-UK DaSH https://elixiruknode.org/projects/elixir-uk-dash/ https://tess.elixir-europe.org/content_providers/elxir-uk-dash In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford. The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources, such as the RDMkit and the FAIR Cookbook. It focuses on building capacity and professionalising data stewardship while leveraging the local expertise within diverse UK institutions – creating a data management culture change from within the institutions. /system/content_providers/images/000/000/652/original/elixir-uk-dash-logo.svg?1660752689 -
VBCF BioComp
BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide...
19 training materialsVBCF BioComp http://biocomp.vbcf.ac.at/training/index.html https://tess.elixir-europe.org/content_providers/vbcf-biocomp BioComp is one of the core facilities at the Vienna BioCenter Core Facilities (VBCF). We offer data analysis services for next-generation sequencing data and develop software solutions for biological experiments, with an emphasis on image and video processing and hardware control. We also provide custom-made data management solutions to research groups. BioComp offers trainings and consultations in the areas of bioinformatics, statistics and computational skills. /system/content_providers/images/000/000/045/original/biocomp.jpg?1469458450 -
eNanoMapper
eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports...
10 training materialseNanoMapper http://enanomapper.net/ https://tess.elixir-europe.org/content_providers/enanomapper eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports the collaborative safety assessment for ENMs by creating a modular, extensible infrastructure for transparent data sharing, data analysis, and the creation of computational toxicology models for ENMs. eNanoMapper was funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no 604134. /system/content_providers/images/000/000/092/original/logo.png?1528313779 -
EMBL-ABR
EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.
EMBL-ABR aims to:- increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the...
9 training materials0 events (193 past events)EMBL-ABR https://www.embl-abr.org.au/ https://tess.elixir-europe.org/content_providers/embl-abr EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics. /system/content_providers/images/000/000/072/original/embl-australia-logo-colour-FIN-e1462860151765.jpg?1488905402