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Tools: V-pipe
How to use V-pipe (SARS-CoV-2 data)
This tutorial demonstrate how to use V-pipe - Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations.
For the purpose of this toturial, we use the sars-cov2 branch of V-pipe and analyse SARS-CoV-2 runs downloaded from NCBI SRA.
Scientific topics: Virology, Genetic variation, Workflows
Operations: Variant calling, Alignment, Read pre-processing
Keywords: coronavirus, NGS bioinformatics, Variant-calling
Resource type: Computer Software, workflow