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Scientific topics: Metabolomics 


Organisation and utilisation of hologenomic datasets – course notes

This course covered the generation and application of large-scale holo-omic data sets, such as those produced within the HoloFood project. This course was run in September 2022, in-person in Bilbao, as part of the 1st Applied Hologenomics Conference. These course notes include the lecture slides...

Scientific topics: Metatranscriptomics, Sample collections, Metabolomics, Metagenomics

Keywords: hologenomics, metagenomics, Metabolomics, MGnify, Workshop

Resource type: Slides, course materials, hands-on tutorial

Hands-on for 'Mass spectrometry: LC-MS preprocessing with XCMS' tutorial

The questions this addresses are:
- What are the main steps of untargeted LC-MS data preprocessing for metabolomic analyses?
- How to conduct metabolomic data preprocessing using Galaxy?

The objectives are:
- To comprehend the diversity of steps necessary to perform untargeted LC-MS...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry imaging: Finding differential analytes' tutorial

The questions this addresses are:
- Can N-linked glycans from FFPE tissues be detected by MALDI imaging?
- Can potential N-linked glycans be identified by an additional LC-MS/MS experiment?
- Do specific kidney compartments have different N-linked glycan compositions?

The objectives are:
-...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry: LC-MS analysis' tutorial

The questions this addresses are:
- What are the main steps of untargeted LC-MS data processing for metabolomic analysis?
- How to conduct metabolomic data analysis from preprocessing to annotation using Galaxy?

The objectives are:
- To comprehend the diversity of LC-MS metabolomic data...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry : GC-MS analysis with metaMS package' tutorial

The questions this addresses are:
- What are the main steps of GC-MS datas processing for metabolomic analysis ?
- How te be able to annotate the maximum of unknowns using Galaxy ?

The objectives are:
- To be sure you have already comprehend the diversity of MS pre-processing analysis.
-...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry: LC-MS data processing' tutorial

The questions this addresses are:
- Why should one consider performing data processing steps when dealing with Metabolomics data?
- How to conduct LCMS-based untargeted metabolomic data processing using Galaxy?

The objectives are:
- To comprehend the key role of data processing.
- To...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry imaging: Examining the spatial distribution of analytes' tutorial

The questions this addresses are:
- What is the typical mass range of VOCs?
- In which compartments of the chilli are the measured VOCs located?
- In which compartment of the chilli is the capsaicin located?

The objectives are:
- Plot average mass spectra and overlaid mass spectra of...

Scientific topics: Metabolomics

Keywords: metabolomics

Resource type: hands-on tutorial

Introduction to 'Metabolomics'

Slides for Metabolomics

Scientific topics: Metabolomics

Resource type: slides

#metawinterschool contribution by BiGCaT

Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis.

Scientific topics: Metabolomics

Keywords: Metabolomics, Identifiers, ELIXIR RIR, BridgeDb

Resource type: Tutorial

PhenoMeNal: accessing metabolomics workflows in Galaxy

PhenoMeNal (Phenome and Metabolome aNalysis) is a standardised e-infrastructure that supports the data processing and analysis pipelines for molecular phenotype data generated by metabolomics applications. This course will give you an overview of PhenoMeNal, how to create your cloud research...

Scientific topics: Metabolomics, Chemical biology

Keywords: Galaxy