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7 materials found

Scientific topics: Genotype and phenotype 


Introduction to exploring genome-phenome data with EGA

European Genome-phenome Archive (EGA) is a permanent repository for all types of potentially identifiable genetic and phenotypic data from biomedical research projects.

This webinar aims to cover a quick introduction to EGA by exploring topics ranging from searching and accessing data in EGA...

Scientific topics: Genotype and phenotype

Resource type: Recorded webinar

Mouse strains in Ensembl

Ensembl not only provides up-to-date annotation of the mouse reference genome assembly, but also allows you to browse the genomes of 16 other mouse strains.

This webinar will consist of a short presentation that will describe the origin of the data, followed by a demonstration on how to use...

Scientific topics: Animal study, Genetics, Genomics, Genotype and phenotype

Resource type: Recorded webinar

The International Mouse Phenotyping Consortium (IMPC): a large-scale functional catalogue of mammalian genes

The IMPC is an international research infrastructure, comprised by 21 of the leading mouse genetics centres worldwide, that is systematically identifying the function of every protein-coding gene in the mouse genome. Despite having sequenced the entire genomes of many species, the exact function...

Scientific topics: Animal study, Genetics, Genotype and phenotype

Resource type: Recorded webinar

European Genome-phenome Archive

This quick tour provides a brief introduction to the European Genome-phenome Archive (EGA), a permanent repository for all types of potentially identifiable genetic and phenotypic data from biomedical research projects.

Scientific topics: Genotype and phenotype

Keywords: EGA, Biomedical data, Phenotype, Genetic data

Resource type: e-learning

The International Mouse Phenotyping Consortium

The International Mouse Phenotyping Consortium (IMPC) portal provides a freely available comprehensive catalogue of mammalian gene function, using the mouse as a model. By applying a standardised phenotyping pipeline to single-gene knockout mouse lines, the IMPC identifies the physiological...

Scientific topics: Genotype and phenotype, Model organisms

Keywords: Gene function, Mouse models, IMPC, Mammalian Phenotype Ontology, Mouse knockouts, CRISPR

Resource type: e-learning

Functional genomics II

This online course introduces common technologies in functional genomics studies, including microarrays and next generation sequencing (NGS), with a special focus on RNA-sequencing (RNA-seq). We look at important considerations when designing your experiments, data analysis methods, and discuss...

Scientific topics: Functional genomics, Gene expression, Genotype and phenotype, Microarray experiment, RNA-Seq

Keywords: Next-generation sequencing, NGS, Real-time PCR, Microarray, Epigenetic modifications, Histone modifications, DNA-protein interaction, RNA-protein interaction

Resource type: e-learning

PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics

PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics. It allows querying and visualising structural and functional annotations, gene families, protein domains, phylogenetic trees, and genome organization. PLAZA 4.0 is the latest iteration of the PLAZA...

Scientific topics: Genotype and phenotype, Phylogenomics, Evolutionary biology, Comparative genomics, Functional genomics, Plant biology

Operations: Comparison, Visualisation, Annotation

Keywords: plants, Plants bioinformatics, genomics, Visualisation, Annotation

Resource type: Training materials