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19 materials found

Scientific topics: Computer science 


Data protection and security aspects of running simulations on personal data with HPC

When processing health and genetic data in High Performance Computing (HPC) clusters, researchers must consider the application of research ethics principles as well as the General Data Protection Regulation, including issues of identifiability, duties of confidentiality and security, and...

Scientific topics: Computer science, Data security, Personalised medicine

Resource type: Recorded webinar

ResOps

This course will provide an introduction to cloud computing and some practical experience in building, deploying and running applications in cloud platforms - OpenStack, Google, Amazon and Azure.

Scientific topics: Computer science, Data architecture, analysis and design, Software engineering

Resource type: e-learning

How to create a concept for the SPHN Dataset

How to create a concept for the SPHN Dataset is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centred around the SPHN Interoperability Framework developed by the SPHN Data...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics

Operations: Design, Standardisation and normalisation

Keywords: Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization

Resource type: Video, E-Learning

FAIR principles in practice for health data

FAIR principles in practice for health data was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics

Operations: Standardisation and normalisation, Design

Keywords: Clinical data, RDF, Knowledge graph, Semantic framework, FAIR, Findability, Accessibility, Interoperability, Reusability

Resource type: Video, E-learning

Expanding the SPHN RDF Schema

Expanding the SPHN RDF Schema is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science

Operations: Editing, Ontology visualisation, Visualisation, Data handling

Keywords: Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL

Resource type: Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

The RDF and SPARQL training primer was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology

Operations: Query and retrieval, Database search, Data handling, Data retrieval

Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology

Resource type: Video, Training materials, E-learning

Semantic Standards

This video was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and serves as an introduction to the main standards used within the [SPHN Interoperability...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology

Operations: Data handling, Standardisation and normalisation

Keywords: Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD, Interoperability

Resource type: Video, Training materials, E-learning

RDF Schema and Data Visualization

RDF Schema and Data Visualization is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Data visualisation, Medical informatics, FAIR data, Data management, Computer science

Operations: Ontology visualisation, Visualisation, Data retrieval, Data handling, Query and retrieval

Keywords: Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data

Resource type: Video, Training materials, Mock data, E-learning

Validate Graph Data with SHACL

Validate Graph Data with SHACL is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Medical informatics, FAIR data, Data management, Computer science

Operations: Validation, Data handling

Keywords: Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF, RDF graph validation

Resource type: Video, Training materials, E-learning

How to use Python and R with RDF Data

How to use Python and R with RDF Data is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centred around the [SPHN Interoperability...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics

Operations: Query and retrieval, Data handling, Data retrieval

Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB

Resource type: Video, Training materials, Mock data, E-learning

Querying Data with SPARQL

Querying Data with SPARQL is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Data mining

Operations: Query and retrieval, Database search, Data handling, Data retrieval

Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC, Interoperability

Resource type: Video, Training materials with mock data, E-learning

Machine Learning & BioStatistics Hackathon 2020

Materials created at the Machine Learning and BioStatistics hackathon organised by ELIXIR-GR (CERTH) in October and November 2020.

Scientific topics: Machine learning, Statistics and probability, Computer science

Keywords: machine learning, biostatistics, eLearning, EeLP

Resource type: Training materials

HPC Hackathon Materials

Materials developed at the HPC hackathon hosted by ELIXIR-SI (UL) in May and June 2021.

Scientific topics: Computer science

Keywords: HPC, high-performance computing, eLearning, EeLP

Resource type: Training materials

Containers and Workflows training materials hackathon

Materials developed at the Containers and Workflows hackathon organised by ELIXIR-BE (VIB) in February and April 2021.

Scientific topics: Computer science

Keywords: Containers, Workflows, eLearning, EeLP

Resource type: Training materials

ELIXIR AAI Engagement Meetings Materials

ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights.
In the ELIXIR AAI Tas, we are preparing regular Community engagement meetings where we would like to share and discuss together new AAI needs,...

Scientific topics: Computer science

Keywords: AAI, IAM, Authentication, authorisation

Resource type: Documentation, Presentation

DE-Sim examples, tutorials, and documentation

DE-Sim is an open-source, Python-based object-oriented discrete-event simulation (DES) tool that makes it easy to use large, heterogeneous datasets and high-level data science tools such as NumPy, Scipy,...

Scientific topics: Simulation experiment, Computer science, Mathematics, Computational biology

Operations: Modelling and simulation, Visualisation

Keywords: data-driven modeling, Computational modelling, discrete-event simulation, DES, object-oriented programming, Python, data visualization, Data Science

Resource type: examples, Tutorial, Jupyter notebook, API reference

Integrating to ELIXIR AAI -- instructions for developers

Elixir AAI is replaced by LS AAI, collection of material bellow are reffering to new trainings for developers of services for LS AAI and for Experimental AAI (in preparation). LS AAI service serves to authenticate the users and manage their access rights.

Webinars

| Webinar topic | Link...

Scientific topics: Computer science

Keywords: AAI, IAM, Authentication, authorisation

Resource type: Webinar, Presentation, Documentation

Adding schema.org to a GitHub Pages site

​GitHub Pages are an excellent platform for creating informative websites. The hosting is (currently) free which is a huge plus; the collaborative tools allow teams (that may be widely distributed, fluctuating, and/or voluntary) to contribute in a well-structured, verifiable, and open manner; and...

Scientific topics: Computer science

Keywords: Mark-up, Bioschemas, Interoperability

Resource type: Training materials

Introduction to Linux Command Line

Introduction to Linux basic command line

Scientific topics: Computer science

Keywords: Linux basics