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Scientific topics: Data management  or Protein interactions 


NanoCommons - Data Management in Nano Safety Research

Nanosafety research is rapidly transforming into a highly competitive and data-intensive field. Translational research, the introduction of nanoinformatics and the shift towards big data introduce the need for complex data capture, storage, handling, and analysis. This combination is called data...

Scientific topics: Data management

Resource type: Video

NanoCommons - Data Management in Nano Safety Research https://tess.elixir-europe.org/materials/nanocommons-data-management-in-nano-safety-research Nanosafety research is rapidly transforming into a highly competitive and data-intensive field. Translational research, the introduction of nanoinformatics and the shift towards big data introduce the need for complex data capture, storage, handling, and analysis. This combination is called data management and is the most neglected aspect of scientific research. Data management
Implementation of Data Management Plans & Data Stewardship in practice

Materials from the ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, Sept 11, 2018 at ECCB2018, Athens, Greece.

Scientific topics: Data submission, annotation and curation, Data management

Keywords: data management, data stewardship, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Implementation of Data Management Plans & Data Stewardship in practice https://tess.elixir-europe.org/materials/implementation-of-data-management-plans-data-stewardship-in-practice Materials from the ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, Sept 11, 2018 at ECCB2018, Athens, Greece. Celia van Gelder Roland Krause Mateusz Kuzak Brane Leskosek Marko Vidak Robert Pergl Marek Suchanek Jan Slifka Vojtech Knaisl Data submission, annotation and curation Data management data management, data stewardship, eLearning, EeLP bioinformaticians data stewards
STRING exercises

Hands-on exercises using the STRING, STITCH, and DISEASES databases through their respective web interfaces.

Scientific topics: Protein interactions, Molecular interactions, pathways and networks, Bioinformatics

STRING exercises https://tess.elixir-europe.org/materials/string-exercises Hands-on exercises using the STRING, STITCH, and DISEASES databases through their respective web interfaces. Protein interactions Molecular interactions, pathways and networks Bioinformatics Bioinformaticians Biologists
Cytoscape stringApp exercises

Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases.

Scientific topics: Data visualisation, Proteomics, Protein interactions, Molecular interactions, pathways and networks, Bioinformatics

Cytoscape stringApp exercises https://tess.elixir-europe.org/materials/cytoscape-stringapp-exercises Hands-on exercises using the stringApp for Cytoscape to retrieve molecular networks from the STRING and STITCH databases. John "Scooter" Morris Data visualisation Proteomics Protein interactions Molecular interactions, pathways and networks Bioinformatics Bioinformaticians Biologists
EMBL-ABR Best Practice workshop series: the data life-cycle

From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other...

Scientific topics: Data types and objects, Data management

Keywords: bioinformatics, data

EMBL-ABR Best Practice workshop series: the data life-cycle https://tess.elixir-europe.org/materials/embl-abr-best-practice-workshop-series-the-data-life-cycle From 24-28 October 2016, the EMBL-ABR Hub ran a week-long Best Practice workshop series focussing on the Data Life Cycle for biological and bioinformatics data. International and local faculty members joined highly engaged participants from around Australia: students, postdocs, lecturers, other scientists, research assistants and research data managers. Jyoti Khadake Sandra Orchard Dan Bolser Suzanna Lewis Data types and objects Data management bioinformatics, data Biologists bioinformaticians
Custom training: Ingenuity Pathway Analysis

The aim of this training is to teach you how to use Ingenuity Pathway Analysis (IPA) software on your own data. This can be for various applications: Creating and modifying biological networks e.g. which genes are involved in a certain disease Mapping data to biological processes,...

Scientific topics: Microarray experiment, Proteomics, Protein interactions, Metabolomics

Custom training: Ingenuity Pathway Analysis https://tess.elixir-europe.org/materials/custom-training-ingenuity-pathway-analysis The aim of this training is to teach you how to use Ingenuity Pathway Analysis (IPA) software on your own data. This can be for various applications: Creating and modifying biological networks e.g. which genes are involved in a certain disease Mapping data to biological processes, networks and pathways mapping a list of genes/proteins/chemicals mapping quantitative data e.g. microarray/proteomics/metabolomics data High quality visualisation of biological networks and pathways Assessing the biological significance of pathways in certain physiological conditions e.g. detecting overrepresented pathways in diseases Microarray experiment Proteomics Protein interactions Metabolomics Life Science Researchers post-docs PhD students 2016-04-22 2016-09-26