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Related resources: Variant Analysis dataset  or Metagenomics dataset 


Variant Analysis - Mapping and molecular identification of phenotype-causing mutations

Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - What is mapping-by-sequencing? - How can it help you identify the causative mutation in phenotypic mutants isolated from genetic screens? Objectives of the tutorial: - Use joint...

Resource type: Tutorial

Variant Analysis - Mapping and molecular identification of phenotype-causing mutations https://tess.elixir-europe.org/materials/variant-analysis-mapping-by-sequencing Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - What is mapping-by-sequencing? - How can it help you identify the causative mutation in phenotypic mutants isolated from genetic screens? Objectives of the tutorial: - Use joint variant calling and extraction to facilitate variant comparison across samples - Perform variant linkage analyses for phenotypically selected recombinant progeny - Filter, annotate and report lists of variants
Variant Analysis - Calling variants in non-diploid systems

Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - How does frequency of mitochondrial polymorphisms change from mother to child? Objectives of the tutorial: - Using Galaxy's main site we will see how to call variants in bacteria,...

Resource type: Tutorial

Variant Analysis - Calling variants in non-diploid systems https://tess.elixir-europe.org/materials/variant-analysis-calling-variants-in-non-diploid-systems Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - How does frequency of mitochondrial polymorphisms change from mother to child? Objectives of the tutorial: - Using Galaxy's main site we will see how to call variants in bacteria, viruses, and organelles.
Variant Analysis - Exome sequencing data analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - How to identify the genetic variation with the use of exome sequencing? - What is the pipeline of the process of finding genetic variation which caused the disease? Objectives of the...

Resource type: Tutorial

Variant Analysis - Exome sequencing data analysis https://tess.elixir-europe.org/materials/variant-analysis-exome-sequencing-data-analysis Exome sequencing means that all protein-coding genes in a genome are sequenced Questions of the tutorial: - How to identify the genetic variation with the use of exome sequencing? - What is the pipeline of the process of finding genetic variation which caused the disease? Objectives of the tutorial: - Identification of the genetic variation using the exome sequencing - Using FreeBayes calls for variants generating - Variant analysis and GEMINI queries
Metagenomics - Analyses of metagenomics data - The global picture

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms Questions of the tutorial: - How to analyze metagenomics data? - What information can be extracted of metagenomics data? - What is the difference between amplicon and shotgun data? - What are the difference...

Resource type: Tutorial

Metagenomics - Analyses of metagenomics data - The global picture https://tess.elixir-europe.org/materials/metagenomics-analyses-of-metagenomics-data-the-global-picture Metagenomics is a discipline that enables the genomic study of uncultured microorganisms Questions of the tutorial: - How to analyze metagenomics data? - What information can be extracted of metagenomics data? - What is the difference between amplicon and shotgun data? - What are the difference in the analyses of amplicon and shotgun data? Objectives of the tutorial: - Choosing the best approach to analyze metagenomics data - Selection of tools to analyze amplicon data or shotgun data - Visualisation of a community structure
Metagenomics - 16S Microbial Analysis with Mothur

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms Questions of the tutorial: - What is the effect of normal variation in the gut microbiome on host health? Objectives of the tutorial: - Analyze of 16S rRNA sequencing data using the Mothur toolsuite in...

Resource type: Tutorial

Metagenomics - 16S Microbial Analysis with Mothur https://tess.elixir-europe.org/materials/metagenomics-16s-microbial-analysis-with-mothur Metagenomics is a discipline that enables the genomic study of uncultured microorganisms Questions of the tutorial: - What is the effect of normal variation in the gut microbiome on host health? Objectives of the tutorial: - Analyze of 16S rRNA sequencing data using the Mothur toolsuite in Galaxy