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6 materials found

Keywords: genomics 


Making sense of genomic data: COVID-19 web-based bioinformatics

Develop your understanding of bioinformatics and SARS-CoV-2 data analysis:
Although testing and sequencing capacity has improved, in low-and-middle-income countries (LMICs) bioinformatics analyses still represent a bottleneck in the implementation of effective viral surveillance...

Keywords: bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain

Resource type: FREE online course

From Swab to Server: Testing, Sequencing, and Sharing During a Pandemic

Discover how sample strategies can affect scientific research and results:
Sampling is a critical part of research in any field. In studying a disease such as Covid-19, it’s imperative that your sample and sampling methods are best-suited to reflect accurate results.

Supported by expert...

Keywords: metadata, Sequencing, genomics, Genomic data, data quality, scientific quality assurance, data sharing, ethics, data ethics, public health, coronavirus, sars-cov-2, covid-19, data linkage

Resource type: FREE online course

The Power of Genomics to Understand the COVID-19 Pandemic

Explore genome sequencing and the SARS-CoV-2 genome:
The course starts with a review of how viruses cause diseases and pandemics, examining the factors that can lead to a public health emergency.

You’ll also get a comprehensive introduction to the SARS-CoV-2 genome structure, and learn...

Keywords: coronavirus, covid-19, sars-cov-2, mutations, Variant calling, Sequencing, pandemic, surveillance, genomics, public health, Genomic data

Resource type: FREE online course

Datanator tutorial

Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA...

Scientific topics: Omics, Bioinformatics, Systems biology, Cell biology, Molecular biology

Operations: Filtering, Query and retrieval

Keywords: genomics, Proteomics, transcriptomics, Metabolomics, reaction kinetics, Kinetic modeling, meta analysis

Resource type: Tutorial

How to install and deploy Beacon

This is an online tutorial where you can learn how to install the Beacon application and "light a beacon" (i.e. deploy the Beacon application) on your data.

The tutorial is hosted on the ELIXIR-SI eLearning Platform (EeLP). The main part of the tutorial are learning materials with...

Scientific topics: Genomics

Keywords: genomics, open access, eLearning, EeLP

Resource type: Video, Manual, Slides, Installation instructions

PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics

PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics. It allows querying and visualising structural and functional annotations, gene families, protein domains, phylogenetic trees, and genome organization. PLAZA 4.0 is the latest iteration of the PLAZA...

Scientific topics: Plant biology, Functional genomics, Comparative genomics, Evolutionary biology, Phylogenomics, Genotype and phenotype

Operations: Annotation, Visualisation, Comparison

Keywords: plants, Plants bioinformatics, genomics, Visualisation, Annotation

Resource type: Training materials