Summer School 2018 TrainMalta: Epigenomics. Introduction to Unix and Rhttps://github.com/semacu/20180726_TrainMalta_Unix_Rhttps://tess.elixir-europe.org/materials/summer-school-2018-trainmalta-epigenomics-introduction-to-unix-and-rAn overview of Unix and R for bioinformaticsSergio Martínez CuestaLuigi GrassiUnix, R-programmingPhD studentsLife Science Researchers
Increasing amounts of bioinformatics work is done in a command line unix environment. Most large scale processing applications are written for unix and most large scale compute environments are also based on this.
This course provides an introduction to the concepts of unix and provides a...
Keywords: Unix, Babraham Institute
An Introduction to Unixhttp://www.bioinformatics.babraham.ac.uk/training.html#unixhttps://tess.elixir-europe.org/materials/an-introduction-to-unixIncreasing amounts of bioinformatics work is done in a command line unix environment. Most large scale processing applications are written for unix and most large scale compute environments are also based on this.
This course provides an introduction to the concepts of unix and provides a practical introduction to working in this environment. Internally we link this course to a more specific course illustrating the use of our internal cluster environment and this part of the course could be adapted for other sites with different compute infrastructure.Simon AndrewsUnix, Babraham Institute
This self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge.
The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.
At the end of...
Keywords: Problem based learning, Programming, Unix
UNIX Fundamentalshttps://www.mygoblet.org/training-portal/materials/unix-fundamentalshttps://tess.elixir-europe.org/materials/unix-fundamentals-35adf82d-ae32-449d-9627-43b5d18da8ccThis self-learning tutorial aims to present the UNIX environment and to provide the most basic commands to users with no or very little UNIX knowledge.
The examples are taken from various Biological fields but have been chosen carefully to be easily accessible to a wide audience.
At the end of the course, participants are expected to be able to:
Have some understanding on UNIX systems
Navigate through the UNIX filesystem
Execute and understand some UNIX process commands
Correctly set file permissions
Perform basic file management
Participants are encouraged to follow the tutorial sections sequentially.
The tutorial content is sometimes an oversimplification of the Truth - yes, we know!
Due to the diversity of computer systems, we will just assume that participants do have access to a terminal.
For help, please contact your IT support - or a good friend!Authors are affiliated to the SIB Swiss Institute of Bioinformatics:
Vassilios IoannidisWith some content provided by Frédéric Schütz, Volker Flegel and Heinz StockingerContent integration by Grégoire Rossier and Vassilios IoannidisPatricia PalagiProblem based learning, Programming, UnixBench biologistsClinical ScientistsGraduate Studentsbeginner bioinformaticiansbiocurators2014-01-132017-10-09
The first part of this course introduces the UNIX command line on a Linux or Mac. The second part provides a basic introduction to string searches and scripting with AWK and BASH.
Keywords: Awk, Bash, Unix
UNIX command line and scriptinghttps://www.mygoblet.org/training-portal/materials/unix-command-line-and-scriptinghttps://tess.elixir-europe.org/materials/unix-command-line-and-scriptingThe first part of this course introduces the UNIX command line on a Linux or Mac. The second part provides a basic introduction to string searches and scripting with AWK and BASH.András AszódiAwk, Bash, Unix2016-04-212017-10-09
This course provides an introduction to Unix, Perl and Python. In addition to lecture material (in the form of slides), there are exercises, answers to the exercises and pointers to addition resources.
Keywords: Perl, Python, Unix
An Introduction to Unix, Perl and Pythonhttps://www.mygoblet.org/training-portal/materials/introduction-unix-perl-and-pythonhttps://tess.elixir-europe.org/materials/an-introduction-to-unix-perl-and-pythonThis course provides an introduction to Unix, Perl and Python. In addition to lecture material (in the form of slides), there are exercises, answers to the exercises and pointers to addition resources.Fran LewitterPerl, Python, UnixBench biologists2013-07-282017-10-09
