Bioinformatics and Virtual Machines
We introduce the concept of the virtual machine, what they can be used for and the advantages and disadvantages of using them.

** Keywords: **VM, IFR, Institute of Food Research, Quadram Institute, Bioinformatics

Bioinformatics and Virtual Machines
http://moodle.ifr.ac.uk/moodle/course/view.php?id=5
https://tess.elixir-europe.org/materials/bioinformatics-and-virtual-machines
We introduce the concept of the virtual machine, what they can be used for and the advantages and disadvantages of using them.
Mark Fernandes
VM, IFR, Institute of Food Research, Quadram Institute, Bioinformatics

LXDE RStudio with support for bioconductor tools
An LXDE Rstudio with pre-loaded Bioconductor tools for rna-seq DE analysis & visualisation

** Keywords: ** RNA-Seq, IFR, Institute of Food Research, Quadram Institute

LXDE RStudio with support for bioconductor tools
https://hub.docker.com/r/foodresearch/ifr_rstudio_bioc/
https://tess.elixir-europe.org/materials/lxde-rstudio-with-support-for-bioconductor-tools
An LXDE Rstudio with pre-loaded Bioconductor tools for rna-seq DE analysis & visualisation
Mark Fernandes
RNA-Seq, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the EBI's Introduction to RNA-seq course
This is basically the EBI RNA-seq course bundled up in a Docker container using LXDE via TightVNC to provide a graphical environment. The material has been repackaged to use an Ipython Notebook as the learning environment which can be annotated by the learner.

** Keywords: ** RNA-Seq, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the EBI's Introduction to RNA-seq course
https://hub.docker.com/r/foodresearch/ifr_rnaseq_course/
https://tess.elixir-europe.org/materials/ifr-dockerised-version-of-the-ebi-s-introduction-to-rna-seq-course
This is basically the EBI RNA-seq course bundled up in a Docker container using LXDE via TightVNC to provide a graphical environment. The material has been repackaged to use an Ipython Notebook as the learning environment which can be annotated by the learner.
Mark Fernandes
RNA-Seq, IFR, Institute of Food Research, Quadram Institute

Docker version of Welsh Gene Park NGS course
Docker version of Welsh Gene Park NGS course

** Keywords: **NGS, IFR, Institute of Food Research, Quadram Institute

Docker version of Welsh Gene Park NGS course
https://hub.docker.com/r/foodresearch/ngs_intro/
https://tess.elixir-europe.org/materials/docker-version-of-welsh-gene-park-ngs-course
Docker version of Welsh Gene Park NGS course
Mark Fernandes
Welsh Gene Park
NGS, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis
The IFR Dockerised version of the Welsh Genepark's
Introduction to Command-line NGS Analysis course

** Keywords: **NGS, Command line, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis
https://hub.docker.com/r/foodresearch/bppc/
https://tess.elixir-europe.org/materials/ifr-dockerised-version-of-the-welsh-genepark-s-introduction-to-command-line-ngs-analysis
The IFR Dockerised version of the Welsh Genepark's
Introduction to Command-line NGS Analysis course
Mark Fernandes
Welsh Gene Park
NGS, Command line, IFR, Institute of Food Research, Quadram Institute

Basic set operations
Whether you are learning computer science, logic, or probability (or a bunch of other things), it can be very, very useful to have this "set" of skills. From what a set is to how we can operate on them, this tutorial will have you familiar with the basics of sets!

** Keywords: **Independent and dependent events

Basic set operations
https://www.khanacademy.org/math/probability/independent-dependent-probability/basic-set-operations
https://tess.elixir-europe.org/materials/basic-set-operations
Whether you are learning computer science, logic, or probability (or a bunch of other things), it can be very, very useful to have this "set" of skills. From what a set is to how we can operate on them, this tutorial will have you familiar with the basics of sets!
Independent and dependent events
2016-08-14

Dependent probability
What's the probability of picking two "e" from the bag in scrabble (assuming that I don't replace the tiles). Well, the probability of picking an 'e' on your second try depends on what happened in the first (if you picked an 'e' the first time around, then there is one less 'e' in the bag). ...

** Keywords: **Independent and dependent events

Dependent probability
https://www.khanacademy.org/math/probability/independent-dependent-probability/dependent-probability
https://tess.elixir-europe.org/materials/dependent-probability
What's the probability of picking two "e" from the bag in scrabble (assuming that I don't replace the tiles). Well, the probability of picking an 'e' on your second try depends on what happened in the first (if you picked an 'e' the first time around, then there is one less 'e' in the bag). This is just one of many, many type of scenarios involving dependent probability.
Independent and dependent events
2016-08-14

Compound, independent events
What is the probability of making three free throws in a row (LeBron literally asks this in this tutorial).
In this tutorial, we'll explore compound events happening where the probability of one event is not dependent on the outcome of another (compound, independent, events).

** Keywords: **Independent and dependent events

Compound, independent events
https://www.khanacademy.org/math/probability/independent-dependent-probability/independent-events
https://tess.elixir-europe.org/materials/compound-independent-events
What is the probability of making three free throws in a row (LeBron literally asks this in this tutorial).
In this tutorial, we'll explore compound events happening where the probability of one event is not dependent on the outcome of another (compound, independent, events).
Independent and dependent events
2016-08-14

Venn diagrams and adding probabilities
What is the probability of getting a diamond or an ace from a deck of cards? Well I could get a diamond that is not an ace, an ace that is not a diamond, or the ace of diamonds. This tutorial helps us think these types of situations through a bit better (especially with the help of our good...

** Keywords: **Independent and dependent events

Venn diagrams and adding probabilities
https://www.khanacademy.org/math/probability/independent-dependent-probability/addition-rule-probability
https://tess.elixir-europe.org/materials/venn-diagrams-and-adding-probabilities
What is the probability of getting a diamond or an ace from a deck of cards? Well I could get a diamond that is not an ace, an ace that is not a diamond, or the ace of diamonds. This tutorial helps us think these types of situations through a bit better (especially with the help of our good friend, the Venn diagram).
Independent and dependent events
2016-08-14

Basic probability
Can I pick a red frog out of a bag that only contains marbles? Is it smart to buy a lottery ticket?
Even if we are unsure about whether something will happen, can we start to be mathematical about the "chances" of an event (essentially realizing that some things are more likely than others). ...

** Keywords: **Independent and dependent events

Basic probability
https://www.khanacademy.org/math/probability/independent-dependent-probability/basic-probability
https://tess.elixir-europe.org/materials/basic-probability
Can I pick a red frog out of a bag that only contains marbles? Is it smart to buy a lottery ticket?
Even if we are unsure about whether something will happen, can we start to be mathematical about the "chances" of an event (essentially realizing that some things are more likely than others). This tutorial will introduce us to the tools that allow us to think about random events.
Independent and dependent events
2016-08-14