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74 materials found

Keywords: Exploratory-analysis  or metagenomics  or Chip-seq  or Metagenomics  or biohackaton 2018 


bio.tools EDAM drop-in hackathon discussions

bio.tools EDAM drop-in hackathon discussions

Keywords: biohackaton 2018

bio.tools EDAM drop-in hackathon discussions https://tess.elixir-europe.org/materials/bio-tools-edam-drop-in-hackathon-discussions bio.tools EDAM drop-in hackathon discussions biohackaton 2018
Application of RDF-based models and tools for enhancing interoperable

Application of RDF-based models and tools for enhancing interoperable use of biomedical resources

Keywords: biohackaton 2018

Application of RDF-based models and tools for enhancing interoperable https://tess.elixir-europe.org/materials/application-of-rdf-based-models-and-tools-for-enhancing-interoperable Application of RDF-based models and tools for enhancing interoperable use of biomedical resources biohackaton 2018
Development of a GA4GH-compliant, language-agnostic workflow execution service

Development of a GA4GH-compliant, language-agnostic workflow execution service

Keywords: biohackaton 2018

Development of a GA4GH-compliant, language-agnostic workflow execution service https://tess.elixir-europe.org/materials/development-of-a-ga4gh-compliant-language-agnostic-workflow-execution-service Development of a GA4GH-compliant, language-agnostic workflow execution service biohackaton 2018
Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships

Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships

Keywords: biohackaton 2018

Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships https://tess.elixir-europe.org/materials/exploring-pharmacogenomic-lod-for-molecular-explanations-of-gene-drug-relationships Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships biohackaton 2018
From Biotea to Bioschemas: definition of profiles required to represent scholarly publications

From Biotea to Bioschemas: definition of profiles required to represent scholarly publications

Keywords: biohackaton 2018

From Biotea to Bioschemas: definition of profiles required to represent scholarly publications https://tess.elixir-europe.org/materials/from-biotea-to-bioschemas-definition-of-profiles-required-to-represent-scholarly-publications From Biotea to Bioschemas: definition of profiles required to represent scholarly publications biohackaton 2018
Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases

Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases

Keywords: biohackaton 2018

Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases https://tess.elixir-europe.org/materials/data-clearinghouse-validation-and-curation-of-biosamples-ena-breeding-api-endpoints-mar-databases Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases biohackaton 2018
Import workflows into TeSS Concept Maps

Import workflows into TeSS Concept Maps

Keywords: biohackaton 2018

Import workflows into TeSS Concept Maps https://tess.elixir-europe.org/materials/import-workflows-into-tess-concept-maps Import workflows into TeSS Concept Maps biohackaton 2018
Assessing the FAIRness of Training Materials

Assessing the FAIRness of Training Materials

Keywords: biohackaton 2018

Assessing the FAIRness of Training Materials https://tess.elixir-europe.org/materials/assessing-the-fairness-of-training-materials Assessing the FAIRness of Training Materials biohackaton 2018
Alternative episodes for the 4 Open Source Software

Alternative episodes for the 4 Open Source Software (4OSS) lesson focused on different Open Source technologies: Github, Docker, Jupyter Notebook and so on

Keywords: biohackaton 2018

Alternative episodes for the 4 Open Source Software https://tess.elixir-europe.org/materials/alternative-episodes-for-the-4-open-source-software Alternative episodes for the 4 Open Source Software (4OSS) lesson focused on different Open Source technologies: Github, Docker, Jupyter Notebook and so on biohackaton 2018
JSON schema validation with ontologies

JSON schema validation with ontologies

Keywords: biohackaton 2018

JSON schema validation with ontologies https://tess.elixir-europe.org/materials/json-schema-validation-with-ontologies JSON schema validation with ontologies biohackaton 2018
Development of a catalog of federated SPARQL queries in the field of Rare Diseases

Development of a catalog of federated SPARQL queries in the field of Rare Diseases

Keywords: biohackaton 2018

Development of a catalog of federated SPARQL queries in the field of Rare Diseases https://tess.elixir-europe.org/materials/development-of-a-catalog-of-federated-sparql-queries-in-the-field-of-rare-diseases Development of a catalog of federated SPARQL queries in the field of Rare Diseases biohackaton 2018
Building a semantic search engine for biology publications using event stream processing

Building a semantic search engine for biology publications using event stream processing

Keywords: biohackaton 2018

Building a semantic search engine for biology publications using event stream processing https://tess.elixir-europe.org/materials/c-sparql-powered-querying-pipeline-of-biorxiv-publications Building a semantic search engine for biology publications using event stream processing biohackaton 2018
Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)

Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)

Keywords: biohackaton 2018

Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT) https://tess.elixir-europe.org/materials/bioconda-packaging-of-the-regulatory-sequence-analysis-tools-rsat Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT) biohackaton 2018
Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits

Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits

Keywords: biohackaton 2018

Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits https://tess.elixir-europe.org/materials/improve-orphanet-disease-description-knowledge-by-phenotypic-automated-recognition-using-scrapping-toolkits Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits biohackaton 2018
CWL support in Galaxy

CWL support in Galaxy

Keywords: biohackaton 2018

CWL support in Galaxy https://tess.elixir-europe.org/materials/cwl-support-in-galaxy CWL support in Galaxy biohackaton 2018
Transfer of Research Assets between FAIRDOM SEEKs

Transfer of Research Assets between FAIRDOM SEEKs

Keywords: biohackaton 2018

Transfer of Research Assets between FAIRDOM SEEKs https://tess.elixir-europe.org/materials/transfer-of-research-assets-between-fairdom-seeks Transfer of Research Assets between FAIRDOM SEEKs biohackaton 2018
Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment

Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment

Keywords: biohackaton 2018

Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment https://tess.elixir-europe.org/materials/improve-shiny-and-rstudio-integration-within-galaxy-using-galaxy-interactive-environment Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment biohackaton 2018
Galaxy training material improvement and extension

Galaxy training material improvement and extension

Keywords: biohackaton 2018

Galaxy training material improvement and extension https://tess.elixir-europe.org/materials/galaxy-training-material-improvement-and-extension Galaxy training material improvement and extension biohackaton 2018
Pathway effect prediction for protein targets

Pathway effect prediction for protein targets

Keywords: biohackaton 2018

Pathway effect prediction for protein targets https://tess.elixir-europe.org/materials/pathway-effect-prediction-for-protein-targets Pathway effect prediction for protein targets biohackaton 2018
OmicsPath: Finding Relevant omics datasets using pathway information

OmicsPath: Finding Relevant omics datasets using pathway information

Keywords: biohackaton 2018

OmicsPath: Finding Relevant omics datasets using pathway information https://tess.elixir-europe.org/materials/omicspath-finding-relevant-omics-datasets-using-pathway-information OmicsPath: Finding Relevant omics datasets using pathway information biohackaton 2018
Prototyping the new PSICQUIC 2.0

Prototyping the new PSICQUIC 2.0

Keywords: biohackaton 2018

Prototyping the new PSICQUIC 2.0 https://tess.elixir-europe.org/materials/prototyping-the-new-psicquic-2-0 Prototyping the new PSICQUIC 2.0 biohackaton 2018
Support tools for rapid adoption of compact identifiers in the publishing process

Support tools for rapid adoption of compact identifiers in the publishing process

Keywords: biohackaton 2018

Support tools for rapid adoption of compact identifiers in the publishing process https://tess.elixir-europe.org/materials/support-tools-for-rapid-adoption-of-compact-identifiers-in-the-publishing-process Support tools for rapid adoption of compact identifiers in the publishing process biohackaton 2018
Enrichment and propagation of metagenomic experimental metadata

Enrichment and propagation of metagenomic experimental metadata

Keywords: biohackaton 2018

Enrichment and propagation of metagenomic experimental metadata https://tess.elixir-europe.org/materials/enrichment-and-propagation-of-metagenomic-experimental-metadata Enrichment and propagation of metagenomic experimental metadata biohackaton 2018
Putting structured data into individual entry pages in biological database

Putting structured data into individual entry pages in biological database

Keywords: biohackaton 2018

Putting structured data into individual entry pages in biological database https://tess.elixir-europe.org/materials/putting-structured-data-into-individual-entry-pages-in-biological-database Putting structured data into individual entry pages in biological database biohackaton 2018
ProtVista (protein annotation viewer) extension using Bioschemas data

ProtVista (protein annotation viewer) extension using Bioschemas data

Keywords: biohackaton 2018

ProtVista (protein annotation viewer) extension using Bioschemas data https://tess.elixir-europe.org/materials/protvista-protein-annotation-viewer-extension-using-bioschemas-data ProtVista (protein annotation viewer) extension using Bioschemas data biohackaton 2018
Using blockchain in biomedical provenance, the identifiers use case

Using blockchain in biomedical provenance, the identifiers use case

Keywords: biohackaton 2018

Using blockchain in biomedical provenance, the identifiers use case https://tess.elixir-europe.org/materials/using-blockchain-in-biomedical-provenance-the-identifiers-use-case Using blockchain in biomedical provenance, the identifiers use case biohackaton 2018
Development of BioJS components

Development of BioJS components

Keywords: biohackaton 2018

Development of BioJS components https://tess.elixir-europe.org/materials/development-of-biojs-components Development of BioJS components biohackaton 2018
Lab: Phyloseq Basic Usage for Metagenomics

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Keywords: Metagenomics

Lab: Phyloseq Basic Usage for Metagenomics https://tess.elixir-europe.org/materials/lab-phyloseq-basic-usage-for-metagenomics Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images. Metagenomics
Chip-seq: Motif Analysis Tutorial

Introduction Goal The aim is to : Get familiar with motif analysis of ChIP-seq data. Learn de novo motif discovery methods. In practice : Motif discovery with peak-motifs Differential analysis Random controls

Keywords: Chip-seq, Motif analysis, NGS, Pattern recognition

Chip-seq: Motif Analysis Tutorial https://tess.elixir-europe.org/materials/chip-seq-motif-analysis-tutorial Introduction Goal The aim is to : Get familiar with motif analysis of ChIP-seq data. Learn de novo motif discovery methods. In practice : Motif discovery with peak-motifs Differential analysis Random controls Chip-seq, Motif analysis, NGS, Pattern recognition
Chip-seq: Functional Annotation tutorial

Global Objective Given a set of ChIP-seq peaks annotate them in order to find associated genes, genomic categories and functional terms.

Keywords: Chip-seq, Functional Annotation, NGS

Chip-seq: Functional Annotation tutorial https://tess.elixir-europe.org/materials/chip-seq-functional-annotation-tutorial Global Objective Given a set of ChIP-seq peaks annotate them in order to find associated genes, genomic categories and functional terms. Chip-seq, Functional Annotation, NGS