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36 materials found

Keywords: Exploratory-analysis  or Descriptive statistics  or Chemical biology 


EMBL-EBI Train Online

If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently.

Scientific topics: Bioinformatics

Keywords: Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems

EMBL-EBI Train Online https://tess.elixir-europe.org/materials/embl-ebi-train-online If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently. Bioinformatics Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems Beginner informatics Life sciences 2018-05-11
RNA-seq module Frederik Coppens

Material concerning RNA-seq analysis, with an emphasis on the statistical aspects.

Keywords: FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

RNA-seq module Frederik Coppens https://tess.elixir-europe.org/materials/rna-seq-module-frederik-coppens-4a328fa8-0bef-471c-84e4-b0d89d216128 Material concerning RNA-seq analysis, with an emphasis on the statistical aspects. FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis
Sal's old statistics videos

This tutorial covers central tendency and dispersion. It is redundant with the other tutorials on this topic, but it has the benefit of messy handwriting and a cheap microphone. This is Sal circa 2007 so take it all with a grain of salt (or just skip it altogether).

Keywords: Descriptive statistics

Sal's old statistics videos https://tess.elixir-europe.org/materials/sal-s-old-statistics-videos This tutorial covers central tendency and dispersion. It is redundant with the other tutorials on this topic, but it has the benefit of messy handwriting and a cheap microphone. This is Sal circa 2007 so take it all with a grain of salt (or just skip it altogether). Descriptive statistics 2016-08-14
Variance and standard deviation

We have tools (like the arithmetic mean) to measure central tendency and are now curious about representing how much the data in a set varies from that central tendency. In this tutorial we introduce the variance and standard deviation (which is just the square root of the variance) as two...

Keywords: Descriptive statistics

Variance and standard deviation https://tess.elixir-europe.org/materials/variance-and-standard-deviation We have tools (like the arithmetic mean) to measure central tendency and are now curious about representing how much the data in a set varies from that central tendency. In this tutorial we introduce the variance and standard deviation (which is just the square root of the variance) as two commonly used tools for doing this. Descriptive statistics 2016-08-14
Box-and-whisker plots

Whether you're looking at scientific data or stock price charts, box-and-whisker plots can show up in your life. This tutorial covers what they are, how to read them and how to construct them. We'd consider this tutorial very optional, but it is a good application of dealing with medians and...

Keywords: Descriptive statistics

Box-and-whisker plots https://tess.elixir-europe.org/materials/box-and-whisker-plots Whether you're looking at scientific data or stock price charts, box-and-whisker plots can show up in your life. This tutorial covers what they are, how to read them and how to construct them. We'd consider this tutorial very optional, but it is a good application of dealing with medians and ranges. Descriptive statistics 2016-08-14
Measures of central tendency

This is the foundational tutorial for the rest of statistics. We start thinking about how you can represent a set of numbers with one number that somehow represents the "center". We then talk about the differences between populations, samples, parameters and statistics.

Keywords: Descriptive statistics

Measures of central tendency https://tess.elixir-europe.org/materials/measures-of-central-tendency This is the foundational tutorial for the rest of statistics. We start thinking about how you can represent a set of numbers with one number that somehow represents the "center". We then talk about the differences between populations, samples, parameters and statistics. Descriptive statistics 2016-08-14
PDBe: Searching for biological macromolecular structures

PDBe: Searching for biological macromolecular structures from http://www.ebi.ac.uk/training/online/course/pdbe-searching-biological-macromolecular-structure.

Keywords: Proteins, Chemical biology, Structures

PDBe: Searching for biological macromolecular structures https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures PDBe: Searching for biological macromolecular structures from http://www.ebi.ac.uk/training/online/course/pdbe-searching-biological-macromolecular-structure. Proteins, Chemical biology, Structures 2016-05-26
Druggability and the druggable genome

Druggability and the druggable genome from http://www.ebi.ac.uk/training/online/course/druggability-and-druggable-genome.

Keywords: Chemical biology

Druggability and the druggable genome https://tess.elixir-europe.org/materials/druggability-and-the-druggable-genome Druggability and the druggable genome from http://www.ebi.ac.uk/training/online/course/druggability-and-druggable-genome. Chemical biology 2016-06-14
Drug repurposing

Drug repurposing from http://www.ebi.ac.uk/training/online/course/drug-repurposing.

Keywords: Chemical biology

Drug repurposing https://tess.elixir-europe.org/materials/drug-repurposing Drug repurposing from http://www.ebi.ac.uk/training/online/course/drug-repurposing. Chemical biology 2016-06-14
Computational chemistry in drug discovery

Computational chemistry in drug discovery from http://www.ebi.ac.uk/training/online/course/computational-chemistry-drug-discovery.

Keywords: Chemical biology

Computational chemistry in drug discovery https://tess.elixir-europe.org/materials/computational-chemistry-in-drug-discovery Computational chemistry in drug discovery from http://www.ebi.ac.uk/training/online/course/computational-chemistry-drug-discovery. Chemical biology 2016-06-14
PDBeChem: Searching for small molecules and small molecule fragments

PDBeChem: Searching for small molecules and small molecule fragments from http://www.ebi.ac.uk/training/online/course/pdbechem-searching-small-molecules-and-small-molec.

Scientific topics: Small molecules

Keywords: Proteins, Chemical biology, Structures

PDBeChem: Searching for small molecules and small molecule fragments https://tess.elixir-europe.org/materials/pdbechem-searching-for-small-molecules-and-small-molecule-fragments PDBeChem: Searching for small molecules and small molecule fragments from http://www.ebi.ac.uk/training/online/course/pdbechem-searching-small-molecules-and-small-molec. Small molecules Proteins, Chemical biology, Structures 2016-04-22
PDBe: Searching the Protein Data Bank

PDBe: Searching the Protein Data Bank from http://www.ebi.ac.uk/training/online/course/pdbe-searching-protein-data-bank.

Keywords: Proteins, Chemical biology, Structures

PDBe: Searching the Protein Data Bank https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank PDBe: Searching the Protein Data Bank from http://www.ebi.ac.uk/training/online/course/pdbe-searching-protein-data-bank. Proteins, Chemical biology, Structures 2016-05-26
PDBe: Exploring a Protein Data Bank (PDB) entry

PDBe: Exploring a Protein Data Bank (PDB) entry from http://www.ebi.ac.uk/training/online/course/pdbe-exploring-protein-data-bank-pdb-entry.

Keywords: Proteins, Chemical biology, Structures

PDBe: Exploring a Protein Data Bank (PDB) entry https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry PDBe: Exploring a Protein Data Bank (PDB) entry from http://www.ebi.ac.uk/training/online/course/pdbe-exploring-protein-data-bank-pdb-entry. Proteins, Chemical biology, Structures 2016-06-14
myChEMBL: webinar

myChEMBL: webinar from http://www.ebi.ac.uk/training/online/course/mychembl-webinar.

Keywords: Chemical biology

myChEMBL: webinar https://tess.elixir-europe.org/materials/mychembl-webinar myChEMBL: webinar from http://www.ebi.ac.uk/training/online/course/mychembl-webinar. Chemical biology 2016-06-14
PDBe: An introduction to search and entry pages: webinar

PDBe: An introduction to search and entry pages: webinar from http://www.ebi.ac.uk/training/online/course/pdbe-introduction-search-and-entry-pages-webinar.

Keywords: Proteins, Chemical biology, Structures

PDBe: An introduction to search and entry pages: webinar https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar PDBe: An introduction to search and entry pages: webinar from http://www.ebi.ac.uk/training/online/course/pdbe-introduction-search-and-entry-pages-webinar. Proteins, Chemical biology, Structures 2016-04-14
Metabolomics: An introduction

Metabolomics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-metabolomics.

Keywords: Systems, Chemical biology

Metabolomics: An introduction https://tess.elixir-europe.org/materials/metabolomics-an-introduction Metabolomics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-metabolomics. Systems, Chemical biology 2016-06-14
MetaboLights: Quick tour

MetaboLights: Quick tour from http://www.ebi.ac.uk/training/online/course/metabolights-quick-tour-0.

Keywords: Systems, Chemical biology

MetaboLights: Quick tour https://tess.elixir-europe.org/materials/metabolights-quick-tour MetaboLights: Quick tour from http://www.ebi.ac.uk/training/online/course/metabolights-quick-tour-0. Systems, Chemical biology 2016-06-14
Enzyme Portal: Quick tour

Enzyme Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/enzyme-portal-quick-tour-0.

Keywords: Proteins, Chemical biology

Enzyme Portal: Quick tour https://tess.elixir-europe.org/materials/enzyme-portal-quick-tour Enzyme Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/enzyme-portal-quick-tour-0. Proteins, Chemical biology 2016-06-14
diXa data warehouse: Exploring data from toxicogenomics studies

diXa data warehouse: Exploring data from toxicogenomics studies from http://www.ebi.ac.uk/training/online/course/dixa-data-warehouse-exploring-data-toxicogenomics.

Keywords: Gene Expression, Ontologies, Chemical biology

diXa data warehouse: Exploring data from toxicogenomics studies https://tess.elixir-europe.org/materials/dixa-data-warehouse-exploring-data-from-toxicogenomics-studies diXa data warehouse: Exploring data from toxicogenomics studies from http://www.ebi.ac.uk/training/online/course/dixa-data-warehouse-exploring-data-toxicogenomics. Gene Expression, Ontologies, Chemical biology 2016-06-14
ChEMBL: Quick tour

ChEMBL: Quick tour from http://www.ebi.ac.uk/training/online/course/chembl-quick-tour.

Keywords: Chemical biology

ChEMBL: Quick tour https://tess.elixir-europe.org/materials/chembl-quick-tour ChEMBL: Quick tour from http://www.ebi.ac.uk/training/online/course/chembl-quick-tour. Chemical biology 2016-06-14
ChEMBL: Exploring bioactive drug-like molecules

ChEMBL: Exploring bioactive drug-like molecules from http://www.ebi.ac.uk/training/online/course/chembl-exploring-bioactive-drug-molecules.

Keywords: Chemical biology, Structures

ChEMBL: Exploring bioactive drug-like molecules https://tess.elixir-europe.org/materials/chembl-exploring-bioactive-drug-like-molecules ChEMBL: Exploring bioactive drug-like molecules from http://www.ebi.ac.uk/training/online/course/chembl-exploring-bioactive-drug-molecules. Chemical biology, Structures 2016-06-14
ChEMBL walkthrough: webinar

ChEMBL walkthrough: webinar from http://www.ebi.ac.uk/training/online/course/chembl-walkthrough-webinar.

Keywords: Chemical biology

ChEMBL walkthrough: webinar https://tess.elixir-europe.org/materials/chembl-walkthrough-webinar ChEMBL walkthrough: webinar from http://www.ebi.ac.uk/training/online/course/chembl-walkthrough-webinar. Chemical biology 2016-06-14
ChEBI: The online chemical dictionary for small molecules

ChEBI: The online chemical dictionary for small molecules from http://www.ebi.ac.uk/training/online/course/chebi-online-chemical-dictionary-small-molecules.

Scientific topics: Small molecules

Keywords: Chemical biology

ChEBI: The online chemical dictionary for small molecules https://tess.elixir-europe.org/materials/chebi-the-online-chemical-dictionary-for-small-molecules ChEBI: The online chemical dictionary for small molecules from http://www.ebi.ac.uk/training/online/course/chebi-online-chemical-dictionary-small-molecules. Small molecules Chemical biology 2016-06-14
ChEBI: Quick tour

ChEBI: Quick tour from http://www.ebi.ac.uk/training/online/course/chebi-quick-tour.

Keywords: Chemical biology

ChEBI: Quick tour https://tess.elixir-europe.org/materials/chebi-quick-tour ChEBI: Quick tour from http://www.ebi.ac.uk/training/online/course/chebi-quick-tour. Chemical biology 2016-06-14
Variant-calling

No description available

Keywords: Alignment, Annotation, BAM, BCF, De-novo-transcriptome-assembly, Exploratory-analysis, FASTQ, Pre-processing, QC, Statistical-model, Variant-calling, VCF

Variant-calling https://tess.elixir-europe.org/materials/variant-calling No description available Alignment, Annotation, BAM, BCF, De-novo-transcriptome-assembly, Exploratory-analysis, FASTQ, Pre-processing, QC, Statistical-model, Variant-calling, VCF
Day 4 - RNA-Seq Analysis

Day 4 focuses on the final steps after production of significant gene lists, including gene clustering, visualization, and annotation.

Keywords: Exploratory-analysis, Differential-expression, Statistical-model, Annotation

Day 4 - RNA-Seq Analysis https://tess.elixir-europe.org/materials/day-4-rna-seq-analysis Day 4 focuses on the final steps after production of significant gene lists, including gene clustering, visualization, and annotation. Exploratory-analysis, Differential-expression, Statistical-model, Annotation
Statistics and RNA-Seq

This lecture and optional practical introduce the relevant statistical concepts along with its computational counterparts used on a common RNA-Seq data analysis workflow.

Keywords: FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis

Statistics and RNA-Seq https://tess.elixir-europe.org/materials/statistics-and-rna-seq This lecture and optional practical introduce the relevant statistical concepts along with its computational counterparts used on a common RNA-Seq data analysis workflow. FASTQ, Alignment, BAM, Differential-expression, Statistical-model, Exploratory-analysis
Material for the course RNA-seq data analysis with Chipster

This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis.

Scientific topics: RNA-Seq

Keywords: RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis

Material for the course RNA-seq data analysis with Chipster https://tess.elixir-europe.org/materials/material-for-the-course-rna-seq-data-analysis-with-chipster This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis. RNA-Seq RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Day 3 - RNA-Seq Analysis

Day 3 focuses on statistical analysis of RNA-Seq data and identification of differentiall expressed genes in multiple comparisons.

Keywords: QC, Exploratory-analysis, Differential-expression, Statistical-model, Pre-processing

Day 3 - RNA-Seq Analysis https://tess.elixir-europe.org/materials/day-3-rna-seq-analysis Day 3 focuses on statistical analysis of RNA-Seq data and identification of differentiall expressed genes in multiple comparisons. QC, Exploratory-analysis, Differential-expression, Statistical-model, Pre-processing
RNA-Seq Analysis with Biocluster and R

Sequencing of RNA (RNA-Seq) is the latest method to assess global gene expression because it

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Alignment, Annotation, BAM, Differential-expression, Exploratory-analysis, Expression-estimation, FASTA, FASTQ, Feature-summarisation, Pre-processing, QC, Statistical-model

RNA-Seq Analysis with Biocluster and R https://tess.elixir-europe.org/materials/rna-seq-analysis-with-biocluster-and-r Sequencing of RNA (RNA-Seq) is the latest method to assess global gene expression because it RNA-Seq RNA-Seq, Alignment, Annotation, BAM, Differential-expression, Exploratory-analysis, Expression-estimation, FASTA, FASTQ, Feature-summarisation, Pre-processing, QC, Statistical-model