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18 materials found

Keywords: Experimental-design  or Systems 


EMBL-EBI Train Online

If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently.

Scientific topics: Bioinformatics

Keywords: Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems

EMBL-EBI Train Online https://tess.elixir-europe.org/materials/embl-ebi-train-online If you work in the life sciences, you may find that you’re spending less time doing experiments and more time analysing huge amounts of biological data. Train online is here to help you do this quickly and efficiently. Bioinformatics Bioinformatics, Chemical biology, Cross domain, Dna rna, Gene expression, Literature, Ontologies, Proteins, Structures, Systems Beginner informatics Life sciences 2018-05-11
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling-cfd4c18f-6c86-45ae-ab0b-630422c76af6 This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-5049bc9c-9bbb-4a6b-9244-37ed3980da0e ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R - Quality Control

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - File formats and QC

This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - File formats and QC https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-file-formats-and-qc This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - Quality Control Walkthrough

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthrough https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthrough This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
Metabolomics: An introduction

Metabolomics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-metabolomics.

Keywords: Systems, Chemical biology

Metabolomics: An introduction https://tess.elixir-europe.org/materials/metabolomics-an-introduction Metabolomics: An introduction from http://www.ebi.ac.uk/training/online/course/introduction-metabolomics. Systems, Chemical biology 2016-06-14
MetaboLights: Quick tour

MetaboLights: Quick tour from http://www.ebi.ac.uk/training/online/course/metabolights-quick-tour-0.

Keywords: Systems, Chemical biology

MetaboLights: Quick tour https://tess.elixir-europe.org/materials/metabolights-quick-tour MetaboLights: Quick tour from http://www.ebi.ac.uk/training/online/course/metabolights-quick-tour-0. Systems, Chemical biology 2016-06-14
IntAct: The molecular interactions database at EMBL-EBI: webinar

IntAct: The molecular interactions database at EMBL-EBI: webinar from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-database-embl-ebi-we.

Keywords: Systems, Proteins

IntAct: The molecular interactions database at EMBL-EBI: webinar https://tess.elixir-europe.org/materials/intact-the-molecular-interactions-database-at-embl-ebi-webinar IntAct: The molecular interactions database at EMBL-EBI: webinar from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-database-embl-ebi-we. Systems, Proteins 2016-06-14
IntAct: Quick tour

IntAct: Quick tour from http://www.ebi.ac.uk/training/online/course/intact-quick-tour.

Keywords: Systems, Proteins

IntAct: Quick tour https://tess.elixir-europe.org/materials/intact-quick-tour IntAct: Quick tour from http://www.ebi.ac.uk/training/online/course/intact-quick-tour. Systems, Proteins 2016-06-14
IMPC: Using the mouse phenotyping portal

IMPC: Using the mouse phenotyping portal from http://www.ebi.ac.uk/training/online/course/impc-using-mouse-phenotyping-portal.

Keywords: Systems, Ontologies

IMPC: Using the mouse phenotyping portal https://tess.elixir-europe.org/materials/impc-using-the-mouse-phenotyping-portal IMPC: Using the mouse phenotyping portal from http://www.ebi.ac.uk/training/online/course/impc-using-mouse-phenotyping-portal. Systems, Ontologies 2016-06-14
IntAct: Molecular interactions at EMBL-EBI

IntAct: Molecular interactions at EMBL-EBI from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-ebi.

Keywords: Systems, Proteins

IntAct: Molecular interactions at EMBL-EBI https://tess.elixir-europe.org/materials/intact-molecular-interactions-at-embl-ebi IntAct: Molecular interactions at EMBL-EBI from http://www.ebi.ac.uk/training/online/course/intact-molecular-interactions-ebi. Systems, Proteins 2016-06-14
Complex Portal: webinar

Complex Portal: webinar from http://www.ebi.ac.uk/training/online/course/complex-portal-webinar.

Keywords: Systems, Ontologies, Proteins, Structures

Complex Portal: webinar https://tess.elixir-europe.org/materials/complex-portal-webinar Complex Portal: webinar from http://www.ebi.ac.uk/training/online/course/complex-portal-webinar. Systems, Ontologies, Proteins, Structures 2016-06-14
Complex Portal: Quick tour

Complex Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/complex-portal-quick-tour.

Keywords: Systems, Ontologies, Proteins, Structures

Complex Portal: Quick tour https://tess.elixir-europe.org/materials/complex-portal-quick-tour Complex Portal: Quick tour from http://www.ebi.ac.uk/training/online/course/complex-portal-quick-tour. Systems, Ontologies, Proteins, Structures 2016-06-14
BioModels Database: Quick tour

BioModels Database: Quick tour from http://www.ebi.ac.uk/training/online/course/biomodels-database-quick-tour.

Keywords: Systems

BioModels Database: Quick tour https://tess.elixir-europe.org/materials/biomodels-database-quick-tour BioModels Database: Quick tour from http://www.ebi.ac.uk/training/online/course/biomodels-database-quick-tour. Systems 2016-06-14
ChIP-Seq

No description available

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

ChIP-Seq https://tess.elixir-europe.org/materials/chip-seq No description available ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation