Register training material
15 materials found

Keywords: Experimental-design  or Ref 


ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling-cfd4c18f-6c86-45ae-ab0b-630422c76af6 This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-5049bc9c-9bbb-4a6b-9244-37ed3980da0e ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R - Quality Control

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - File formats and QC

This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - File formats and QC https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-file-formats-and-qc This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - Quality Control Walkthrough

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthrough https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthrough This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
Recognising prompts and how to exit

Recognising prompts and how to exit from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/05-prompts-exits.md.

Keywords: Ref

Recognising prompts and how to exit https://tess.elixir-europe.org/materials/recognising-prompts-and-how-to-exit Recognising prompts and how to exit from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/05-prompts-exits.md. Ref Novice
SQL Reference

SQL Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/04-sql.md.

Keywords: Ref

SQL Reference https://tess.elixir-europe.org/materials/sql-reference SQL Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/04-sql.md. Ref Novice
Git Reference

Git Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-git.md.

Keywords: Ref

Git Reference https://tess.elixir-europe.org/materials/git-reference Git Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-git.md. Ref Novice
R Reference

R Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/06-R.md.

Keywords: Ref

R Reference https://tess.elixir-europe.org/materials/r-reference R Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/06-R.md. Ref Novice
Shell Reference

Shell Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/01-shell.md.

Keywords: Ref

Shell Reference https://tess.elixir-europe.org/materials/shell-reference Shell Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/01-shell.md. Ref Novice
Python Reference

Python Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/03-python.md.

Keywords: Ref

Python Reference https://tess.elixir-europe.org/materials/python-reference Python Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/03-python.md. Ref Novice
Mercurial Reference

Mercurial Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-hg.md.

Keywords: Ref

Mercurial Reference https://tess.elixir-europe.org/materials/mercurial-reference Mercurial Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-hg.md. Ref Novice
ChIP-Seq

No description available

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

ChIP-Seq https://tess.elixir-europe.org/materials/chip-seq No description available ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation