Register training material
16 materials found

Keywords: Experimental-design  or Inferential statistics 


ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling-cfd4c18f-6c86-45ae-ab0b-630422c76af6 This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-5049bc9c-9bbb-4a6b-9244-37ed3980da0e ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming
Analysis of variance

You already know a good bit about hypothesis testing with one or two samples. Now we take things further by making inferences based on three or more samples. We'll use the very special F-distribution to do it (F stands for "fabulous").

Keywords: Inferential statistics

Analysis of variance https://tess.elixir-europe.org/materials/analysis-of-variance You already know a good bit about hypothesis testing with one or two samples. Now we take things further by making inferences based on three or more samples. We'll use the very special F-distribution to do it (F stands for "fabulous"). Inferential statistics 2016-08-14
Chi-square probability distribution

You've gotten good at hypothesis testing when you can make assumptions about the underlying distributions. In this tutorial, we'll learn about a new distribution (the chi-square one) and how it can help you (yes, you) infer what an underlying distribution even is!

Keywords: Inferential statistics

Chi-square probability distribution https://tess.elixir-europe.org/materials/chi-square-probability-distribution You've gotten good at hypothesis testing when you can make assumptions about the underlying distributions. In this tutorial, we'll learn about a new distribution (the chi-square one) and how it can help you (yes, you) infer what an underlying distribution even is! Inferential statistics 2016-08-14
Hypothesis testing with two samples

You're already familiar with hypothesis testing with one sample. In this tutorial, we'll go further by testing whether the difference between the means of two samples seems to be unlikely purely due to chance.

Keywords: Inferential statistics

Hypothesis testing with two samples https://tess.elixir-europe.org/materials/hypothesis-testing-with-two-samples You're already familiar with hypothesis testing with one sample. In this tutorial, we'll go further by testing whether the difference between the means of two samples seems to be unlikely purely due to chance. Inferential statistics 2016-08-14
Hypothesis testing with one sample

This tutorial helps us answer one of the most important questions not only in statistics, but all of science: how confident are we that a result from a new drug or process is not due to random chance but due to an actual impact. If you are familiar with sampling distributions and confidence...

Keywords: Inferential statistics

Hypothesis testing with one sample https://tess.elixir-europe.org/materials/hypothesis-testing-with-one-sample This tutorial helps us answer one of the most important questions not only in statistics, but all of science: how confident are we that a result from a new drug or process is not due to random chance but due to an actual impact. If you are familiar with sampling distributions and confidence intervals, you're ready for this adventure! Inferential statistics 2016-08-14
Bernoulli distributions and margin of error

Ever wondered what pollsters are talking about when they said that there is a 3% "margin of error" in their results. Well, this tutorial will not only explain what it means, but give you the tools and understanding to be a pollster yourself!

Keywords: Inferential statistics

Bernoulli distributions and margin of error https://tess.elixir-europe.org/materials/bernoulli-distributions-and-margin-of-error Ever wondered what pollsters are talking about when they said that there is a 3% "margin of error" in their results. Well, this tutorial will not only explain what it means, but give you the tools and understanding to be a pollster yourself! Inferential statistics 2016-08-14
Confidence intervals

We all have confidence intervals ("I'm the king of the world!!!!") and non-confidence intervals ("No one loves me"). That is not what this tutorial is about. This tutorial takes what you already know about the central limit theorem, sampling distributions, and z-scores and uses these tools to...

Keywords: Inferential statistics

Confidence intervals https://tess.elixir-europe.org/materials/confidence-intervals We all have confidence intervals ("I'm the king of the world!!!!") and non-confidence intervals ("No one loves me"). That is not what this tutorial is about. This tutorial takes what you already know about the central limit theorem, sampling distributions, and z-scores and uses these tools to dive into the world of inferential statistics. It may seem magical at first, but from our sample, we can now make inferences about the probability of our population mean actually being in an interval. Inferential statistics 2016-08-14
Sampling distribution

In this tutorial, we experience one of the most exciting ideas in statistics--the central limit theorem. Without it, it would be a lot harder to make any inferences about population parameters given sample statistics. It tells us that, regardless of what the population distribution looks like,...

Keywords: Inferential statistics

Sampling distribution https://tess.elixir-europe.org/materials/sampling-distribution In this tutorial, we experience one of the most exciting ideas in statistics--the central limit theorem. Without it, it would be a lot harder to make any inferences about population parameters given sample statistics. It tells us that, regardless of what the population distribution looks like, the distribution of the sample means (you'll learn what that is) can be normal. Good idea to understand a bit about normal distributions before diving into this tutorial. Inferential statistics 2016-08-14
Normal distribution

The normal distribution (often referred to as the "bell curve" is at the core of most of inferential statistics. By assuming that most complex processes result in a normal distribution (we'll see why this is reasonable), we can gauge the probability of it happening by chance. To best enjoy this...

Keywords: Inferential statistics

Normal distribution https://tess.elixir-europe.org/materials/normal-distribution The normal distribution (often referred to as the "bell curve" is at the core of most of inferential statistics. By assuming that most complex processes result in a normal distribution (we'll see why this is reasonable), we can gauge the probability of it happening by chance. To best enjoy this tutorial, it is good to come to it understanding what probability distributions and random variables are. You should also be very familiar with the notions of population and sample mean and standard deviation. Inferential statistics 2016-08-14
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R - Quality Control

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - File formats and QC

This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - File formats and QC https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-file-formats-and-qc This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - Quality Control Walkthrough

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthrough https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthrough This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-Seq

No description available

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

ChIP-Seq https://tess.elixir-europe.org/materials/chip-seq No description available ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation