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Keywords: Experimental-design  or Independent and dependent e... 


ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling-cfd4c18f-6c86-45ae-ab0b-630422c76af6 This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-5049bc9c-9bbb-4a6b-9244-37ed3980da0e ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming
Basic set operations

Whether you are learning computer science, logic, or probability (or a bunch of other things), it can be very, very useful to have this "set" of skills. From what a set is to how we can operate on them, this tutorial will have you familiar with the basics of sets!

Keywords: Independent and dependent events

Basic set operations https://tess.elixir-europe.org/materials/basic-set-operations Whether you are learning computer science, logic, or probability (or a bunch of other things), it can be very, very useful to have this "set" of skills. From what a set is to how we can operate on them, this tutorial will have you familiar with the basics of sets! Independent and dependent events 2016-08-14
Dependent probability

What's the probability of picking two "e" from the bag in scrabble (assuming that I don't replace the tiles). Well, the probability of picking an 'e' on your second try depends on what happened in the first (if you picked an 'e' the first time around, then there is one less 'e' in the bag). ...

Keywords: Independent and dependent events

Dependent probability https://tess.elixir-europe.org/materials/dependent-probability What's the probability of picking two "e" from the bag in scrabble (assuming that I don't replace the tiles). Well, the probability of picking an 'e' on your second try depends on what happened in the first (if you picked an 'e' the first time around, then there is one less 'e' in the bag). This is just one of many, many type of scenarios involving dependent probability. Independent and dependent events 2016-08-14
Compound, independent events

What is the probability of making three free throws in a row (LeBron literally asks this in this tutorial). In this tutorial, we'll explore compound events happening where the probability of one event is not dependent on the outcome of another (compound, independent, events).

Keywords: Independent and dependent events

Compound, independent events https://tess.elixir-europe.org/materials/compound-independent-events What is the probability of making three free throws in a row (LeBron literally asks this in this tutorial). In this tutorial, we'll explore compound events happening where the probability of one event is not dependent on the outcome of another (compound, independent, events). Independent and dependent events 2016-08-14
Venn diagrams and adding probabilities

What is the probability of getting a diamond or an ace from a deck of cards? Well I could get a diamond that is not an ace, an ace that is not a diamond, or the ace of diamonds. This tutorial helps us think these types of situations through a bit better (especially with the help of our good...

Keywords: Independent and dependent events

Venn diagrams and adding probabilities https://tess.elixir-europe.org/materials/venn-diagrams-and-adding-probabilities What is the probability of getting a diamond or an ace from a deck of cards? Well I could get a diamond that is not an ace, an ace that is not a diamond, or the ace of diamonds. This tutorial helps us think these types of situations through a bit better (especially with the help of our good friend, the Venn diagram). Independent and dependent events 2016-08-14
Basic probability

Can I pick a red frog out of a bag that only contains marbles? Is it smart to buy a lottery ticket? Even if we are unsure about whether something will happen, can we start to be mathematical about the "chances" of an event (essentially realizing that some things are more likely than others). ...

Keywords: Independent and dependent events

Basic probability https://tess.elixir-europe.org/materials/basic-probability Can I pick a red frog out of a bag that only contains marbles? Is it smart to buy a lottery ticket? Even if we are unsure about whether something will happen, can we start to be mathematical about the "chances" of an event (essentially realizing that some things are more likely than others). This tutorial will introduce us to the tools that allow us to think about random events. Independent and dependent events 2016-08-14
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R - Quality Control

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - File formats and QC

This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - File formats and QC https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-file-formats-and-qc This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - Quality Control Walkthrough

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthrough https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthrough This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-Seq

No description available

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

ChIP-Seq https://tess.elixir-europe.org/materials/chip-seq No description available ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation