Register training material
18 materials found

Keywords: Experimental-design  or Extras 


Working Remotely

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md.

Keywords: Extras

Working Remotely https://tess.elixir-europe.org/materials/working-remotely-ef26eae5-c8f2-4ad5-9622-3732cafbbe33 Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md. Extras Novice
Permissions

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md.

Keywords: Extras

Permissions https://tess.elixir-europe.org/materials/permissions-ec9e2168-7558-4aef-b417-1627204b2c2f Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md. Extras Novice
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling-cfd4c18f-6c86-45ae-ab0b-630422c76af6 This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-5049bc9c-9bbb-4a6b-9244-37ed3980da0e ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, Peak-calling, Differential-binding, Visualisation, Annotation, Homo-sapiens, R-programming
ChIP-seq analysis using R - Experimental design and peak calling.

This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling.

Keywords: ChIP-Seq, Experimental-design, Peak-calling, Visualisation

ChIP-seq analysis using R - Experimental design and peak calling. https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-experimental-design-and-peak-calling This lecture is an introduction to ChIP-seq experiments and data. It provides a theoretical background to experimental design and peak calling. ChIP-Seq, Experimental-design, Peak-calling, Visualisation
ChIP-seq analysis using R - Quality Control

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - File formats and QC

This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - File formats and QC https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-file-formats-and-qc This lecture introduces the file formats of sequencing data before alignment and covers the general quality control of sequencing data focussing on RNA-Seq and ChIP-Seq. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
ChIP-seq analysis using R - Quality Control Walkthrough

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthrough https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthrough This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts. RNA-Seq ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design
Code Review

Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md.

Keywords: Extras

Code Review https://tess.elixir-europe.org/materials/code-review Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md. Extras Novice
Shell Variables

Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md.

Keywords: Extras

Shell Variables https://tess.elixir-europe.org/materials/shell-variables Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md. Extras Novice
Exceptions

Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md.

Keywords: Extras

Exceptions https://tess.elixir-europe.org/materials/exceptions Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md. Extras Novice
Forking a Repository

Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md.

Keywords: Extras

Forking a Repository https://tess.elixir-europe.org/materials/forking-a-repository Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md. Extras Novice
Numbers

Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md.

Keywords: Extras

Numbers https://tess.elixir-europe.org/materials/numbers Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md. Extras Novice
Branching in Git

Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md.

Keywords: Extras

Branching in Git https://tess.elixir-europe.org/materials/branching-in-git Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md. Extras Novice 2013-08-22
Manual Pages

Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md.

Keywords: Extras

Manual Pages https://tess.elixir-europe.org/materials/manual-pages Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md. Extras Novice
Why I Teach

Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md.

Keywords: Extras

Why I Teach https://tess.elixir-europe.org/materials/why-i-teach Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md. Extras Novice
ChIP-Seq

No description available

Keywords: ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation

ChIP-Seq https://tess.elixir-europe.org/materials/chip-seq No description available ChIP-Seq, Experimental-design, QC, ChIP-Seq-QC, Data-format, Alignment, Peak-calling, Differential-binding, Annotation
ChIP-seq analysis using R

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

Keywords: ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation

ChIP-seq analysis using R https://tess.elixir-europe.org/materials/chip-seq-analysis-using-r ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis. ChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation