Register training material
1271 materials found

Difficulty level: Advanced  or Not specified 


Endo-ERN Educational webinars

Various webinar on rare endocrine conditions

Keywords: Rare Diseases & Research

Endo-ERN Educational webinars https://tess.elixir-europe.org/materials/endo-ern-educational-webinars Various webinar on rare endocrine conditions Rare Diseases & Research
ESPE e-Learning

A Free Globally Accessible Website For Paediatric Endocrinology

Keywords: Rare Diseases & Research

ESPE e-Learning https://tess.elixir-europe.org/materials/espe-e-learning A Free Globally Accessible Website For Paediatric Endocrinology Rare Diseases & Research
EpiCARE ERN Educational webinars

Free online seminars on Thursdays related to rare epilepsies

Keywords: Rare Diseases & Research

EpiCARE ERN Educational webinars https://tess.elixir-europe.org/materials/epicare-ern-educational-webinars Free online seminars on Thursdays related to rare epilepsies Rare Diseases & Research
ERKNet Education and Training

ERKNet disseminate disease information via this website and by webinars

Keywords: Rare Diseases & Research

ERKNet Education and Training https://tess.elixir-europe.org/materials/erknet-education-and-training ERKNet disseminate disease information via this website and by webinars Rare Diseases & Research
ERKNet case-based eLearning curriculum

ERKNet is currently developing a case-based eLearning curriculum, which will be a key component of the structured 3-year post-graduate training program in rare kidney diseases.

Keywords: Rare Diseases & Research

ERKNet case-based eLearning curriculum https://tess.elixir-europe.org/materials/erknet-case-based-elearning-curriculum ERKNet is currently developing a case-based eLearning curriculum, which will be a key component of the structured 3-year post-graduate training program in rare kidney diseases. Rare Diseases & Research
eUROGEN Education and Training webinars

monthly webinar programme on Rare congenital Uro-recto-genital anomalies

Keywords: Rare Diseases & Research

eUROGEN Education and Training webinars https://tess.elixir-europe.org/materials/eurogen-education-and-training-webinars monthly webinar programme on Rare congenital Uro-recto-genital anomalies Rare Diseases & Research
GENTURIS Education and Training webinars

20-30 minutes webinar for clinicians, genetic counsellors, clinical scientists and other genetics health professional

Keywords: Rare Diseases & Research

GENTURIS Education and Training webinars https://tess.elixir-europe.org/materials/genturis-education-and-training-webinars 20-30 minutes webinar for clinicians, genetic counsellors, clinical scientists and other genetics health professional Rare Diseases & Research
ERN GUARD-Heart educational videos

Educational videos for experts

Keywords: Rare Diseases & Research

ERN GUARD-Heart educational videos https://tess.elixir-europe.org/materials/ern-guard-heart-educational-videos Educational videos for experts Rare Diseases & Research
MGnify quick tour

This quick tour provides a brief introduction to MGnify - a free resource for analysis, visualisation and discovery of microbiome (metagenomic, metatranscriptomic, amplicon and assembly) datasets.

Scientific topics: Metagenomics

Keywords: Metagenomics, Sequence analysis, MGnify, Microbiology

Resource type: Tutorial

MGnify quick tour https://tess.elixir-europe.org/materials/mgnify-quick-tour This quick tour provides a brief introduction to MGnify - a free resource for analysis, visualisation and discovery of microbiome (metagenomic, metatranscriptomic, amplicon and assembly) datasets. Ola Tarkowska Lorna Richardson Metagenomics Metagenomics, Sequence analysis, MGnify, Microbiology Life Scientists
DE-Sim examples, tutorials, and documentation

*DE-Sim* is an open-source, Python-based object-oriented discrete-event simulation (DES) tool that makes it easy to use large, heterogeneous datasets and high-level data science tools such as [NumPy](https://numpy.org/), [Scipy](https://scipy.org/scipylib/index.html),...

Scientific topics: Computational biology, Mathematics, Computer science, Simulation experiment

Operations: Visualisation, Modelling and simulation

Keywords: data-driven modeling, Computational modelling, discrete-event simulation, DES, object-oriented programming, Python, data visualization, Data Science

Resource type: examples, Tutorial, Jupyter notebook, API reference

DE-Sim examples, tutorials, and documentation https://tess.elixir-europe.org/materials/de-sim-examples-tutorials-and-documentation *DE-Sim* is an open-source, Python-based object-oriented discrete-event simulation (DES) tool that makes it easy to use large, heterogeneous datasets and high-level data science tools such as [NumPy](https://numpy.org/), [Scipy](https://scipy.org/scipylib/index.html), [pandas](https://pandas.pydata.org/), and [SQLAlchemy](https://www.sqlalchemy.org/) to build and simulate complex computational models. Similar to [Simula](http://www.simula67.info/), *DE-Sim* models are implemented by defining logical process objects which read the values of a set of shared variables and schedule events to modify their values at discrete instants in time. This website provides examples, tutorials, and documentation for *DE-Sim*. Computational biology Mathematics Computer science Simulation experiment data-driven modeling, Computational modelling, discrete-event simulation, DES, object-oriented programming, Python, data visualization, Data Science computational scientists Computational biologists bioinformaticians software engineers programmers
Jaqpot Hackathon - Training materials

Under the subtitle “Take your research from the bench to the community by making your models available as a web service”, attendees learned how to use the Jaqpot suite and python to go from data to model, starting from a common CSV file. Jaqpot is a computational platform for in silico...

Keywords: nanoinformatics, toxicity prediction, e-tools, Modeling, data FAIRness

Jaqpot Hackathon - Training materials https://tess.elixir-europe.org/materials/jaqpot-hackathon-training-materials Under the subtitle “Take your research from the bench to the community by making your models available as a web service”, attendees learned how to use the Jaqpot suite and python to go from data to model, starting from a common CSV file. Jaqpot is a computational platform for in silico modelling of chemical compounds, that provides both access to its services both over a User Interface (GUI) and an Application Programming Interface (API). It is a cloud-ready application that uses the benefits of Java, R and Python, having incorporated functionality by various established and open-source machine learning and data analysis toolkits, while algorithms in any programming algorithm can be added to Jaqpot. Attached you find the following presentations: 1. Intro to NanoCommons by Martin Himly, PLUS 2. Electronic Lab Notebooks by Iseult Lynch, UoB 3. NanoCommons Knowledgebase by Dieter Maier, Biomax 4. Jaqpot Suite by Philip Doganis, NTUA Lee Walker, UKCEH Christine Balmer, UKCEH Irini Liampa, NTUA Pantelis Karatzas, NTUA Beatriz Alfaro Serrano, BNN Harry Sarimveis, NTUA nanoinformatics, toxicity prediction, e-tools, Modeling, data FAIRness
Whole Genome Sequencing: Decoding the Language of Life and Health

Online courses from St George’s, University of London on WGS (3 weeks / 3 hours weekly study).

Keywords: Rare Diseases & Research

Whole Genome Sequencing: Decoding the Language of Life and Health https://tess.elixir-europe.org/materials/whole-genome-sequencing-decoding-the-language-of-life-and-health Online courses from St George’s, University of London on WGS (3 weeks / 3 hours weekly study). Rare Diseases & Research
Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing

Online courses from St George’s, University of London on Next Generation Sequencing (3 weeks / 3 hours weekly study).

Keywords: Rare Diseases & Research

Genomic Technologies in Clinical Diagnostics: Next Generation Sequencing https://tess.elixir-europe.org/materials/genomic-technologies-in-clinical-diagnostics-next-generation-sequencing Online courses from St George’s, University of London on Next Generation Sequencing (3 weeks / 3 hours weekly study). Rare Diseases & Research
Genomic Technologies in Clinical Diagnostics: Molecular Techniques

Online courses from St George’s, University of London on molecular techniques (3 weeks / 5 hours per weekly study).

Keywords: Rare Diseases & Research

Genomic Technologies in Clinical Diagnostics: Molecular Techniques https://tess.elixir-europe.org/materials/genomic-technologies-in-clinical-diagnostics-molecular-techniques Online courses from St George’s, University of London on molecular techniques (3 weeks / 5 hours per weekly study). Rare Diseases & Research
Metagenomics Bioinformatics

Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high throughput sequencing of the microbial DNA, collecting, archiving and resharing the genomic data for taxonomic and functional analysis.

Scientific topics: Metagenomics

Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology

Resource type: Tutorial

Metagenomics Bioinformatics https://tess.elixir-europe.org/materials/metagenomics-bioinformatics Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high throughput sequencing of the microbial DNA, collecting, archiving and resharing the genomic data for taxonomic and functional analysis. Alex Mitchell Varsha Kale Rob Finn Guillermo Rangel Pineros Rebecca Campos Metagenomics Metagenomics, MGnify, Sequence Analysis, Microbiology Life Scientists
EBI Metagenomics: analysing and exploring metagenomics data

EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets...

Scientific topics: Metagenomics

Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology

Resource type: Webinar

EBI Metagenomics: analysing and exploring metagenomics data https://tess.elixir-europe.org/materials/ebi-metagenomics-analysing-and-exploring-metagenomics-data EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive. Alex Mitchell Metagenomics Metagenomics, MGnify, Sequence Analysis, Microbiology Life Scientists
Analysing and visualising microbiome-derived datasets using the MGnify Web API

MGnify (formerly EBI Metagenomics) is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available...

Analysing and visualising microbiome-derived datasets using the MGnify Web API https://tess.elixir-europe.org/materials/analysing-and-visualising-microbiome-derived-datasets-using-the-mgnify-web-api MGnify (formerly EBI Metagenomics) is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets drawn from the European Nucleotide Archive (ENA).
EATRIS Transmed Academy

Online course touching upon key aspects of translational research and medicines development

Keywords: Rare Diseases & Research

EATRIS Transmed Academy https://tess.elixir-europe.org/materials/eatris-transmed-academy Online course touching upon key aspects of translational research and medicines development Rare Diseases & Research
Hyperammonaemia resources

Orphan Europe Academy online programme on Hyperammonaemia

Keywords: Rare Diseases & Research

Hyperammonaemia resources https://tess.elixir-europe.org/materials/hyperammonaemia-resources Orphan Europe Academy online programme on Hyperammonaemia Rare Diseases & Research
Integrated DEsign and AnaLysis of clinical trials in small population group (IDeAl) resources

Webinar Series on Integrated DEsign and AnaLysis of small population group trials

Keywords: Rare Diseases & Research

Integrated DEsign and AnaLysis of clinical trials in small population group (IDeAl) resources https://tess.elixir-europe.org/materials/integrated-design-and-analysis-of-clinical-trials-in-small-population-group-ideal-resources Webinar Series on Integrated DEsign and AnaLysis of small population group trials Rare Diseases & Research
ERN-RND webinars

Rare neurological diseases webinars

Keywords: Rare Diseases & Research

ERN-RND webinars https://tess.elixir-europe.org/materials/ern-rnd-webinars-ec014ea5-fa57-4211-9160-1da47d7ce06f Rare neurological diseases webinars Rare Diseases & Research
ERN-NMD webinars

Rare neuromuscular diseases webinars

Keywords: Rare Diseases & Research

ERN-NMD webinars https://tess.elixir-europe.org/materials/ern-rnd-webinars Rare neuromuscular diseases webinars Rare Diseases & Research
RD-Connect Webinars

Three informative webinars for those researchers involved in ERNs

Keywords: Rare Diseases & Research

RD-Connect Webinars https://tess.elixir-europe.org/materials/euro-nmd-and-rd-connect-webinars Three informative webinars for those researchers involved in ERNs Rare Diseases & Research
Genomics in Healthcare

Online courses from St George’s, University of London on genomic technologies

Keywords: Rare Diseases & Research

Genomics in Healthcare https://tess.elixir-europe.org/materials/genomics-in-healthcare Online courses from St George’s, University of London on genomic technologies Rare Diseases & Research
ELIXIR Bioinformatic resources

Bioinformatic online courses

Keywords: Rare Diseases & Research

ELIXIR Bioinformatic resources https://tess.elixir-europe.org/materials/elixir-bioinformatic-resources Bioinformatic online courses Rare Diseases & Research
Bioinformatics - Food Detective: a Practical Guide

This Practical Guide introduces the idea of computers as tools to help understand aspects of biology. In particular, it looks at how DNA sequences can be used to identify specific organisms, why this is important in the food industry, and how this can be used to help de- tect food fraud. Analyses...

Scientific topics: Sequence analysis, Community profiling

Keywords: Basic bioinformatics, Bioinformatics schools, Dna barcoding, Food fraud, Sequence analysis, Sequence database searching, Species identification, Training material

Bioinformatics - Food Detective: a Practical Guide https://tess.elixir-europe.org/materials/bioinformatics-food-detective-a-practical-guide This Practical Guide introduces the idea of computers as tools to help understand aspects of biology. In particular, it looks at how DNA sequences can be used to identify specific organisms, why this is important in the food industry, and how this can be used to help de- tect food fraud. Analyses are run online using sequence data from the 4273pi project website: 4273pi.org. This Guide introduces a popular Web-based tool for searching biological sequence databases, and shows how to identify different spe- cies based on their specific DNA sequences – their ‘barcodes’. On reading the Guide and completing the exercises, you will be able to: i) explain what is meant by DNA barcoding; ii) search biological sequence databases using the online program BLAST; iii) judge the reliability of database-search results in terms of their statistical significance; and iv) evaluate the biological implications of search results with reference to food safety. Sequence analysis Community profiling Basic bioinformatics, Bioinformatics schools, Dna barcoding, Food fraud, Sequence analysis, Sequence database searching, Species identification, Training material 2020-06-23
BiocCheck-a-thon check in

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

BiocCheck-a-thon check in https://tess.elixir-europe.org/materials/bioccheck-a-thon-check-in Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Discussion about unit testing

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Discussion about unit testing https://tess.elixir-europe.org/materials/discussion-about-unit-testing Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Bioconductor and R 4.0

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Bioconductor and R 4.0 https://tess.elixir-europe.org/materials/bioconductor-and-r-4-0 Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Bioc vs. CRAN build systems

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Bioc vs. CRAN build systems https://tess.elixir-europe.org/materials/bioc-vs-cran-build-systems Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.