Register training material
4 materials found

Contributors: Prof. Tom Freeman  or Michael Krone  or Jalview Coordinator  or Dr. Simon Andrews 


Jalview

Dr James Proctor of the University of Dundee discusses the Jalview tool in the Vis Tools & Bio Challenges session of the 1st BiVi Annual Meeting Created at: 1st BiVi Annual Meeting.

Scientific topics: Phylogenetics

Keywords: Genome, Molecular, Phylogenetics

Resource type: Poster, Video

Jalview https://tess.elixir-europe.org/materials/jalview Dr James Proctor of the University of Dundee discusses the Jalview tool in the Vis Tools & Bio Challenges session of the 1st BiVi Annual Meeting Created at: 1st BiVi Annual Meeting. Dr. Jim Procter Jalview Coordinator Phylogenetics Genome, Molecular, Phylogenetics 2016-12-08
BiVi theme: Pathways

Prof Tom Freeman discusses bio-visualisation within the Pathway theme at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Scientific topics: Pathway or network

Keywords: Pathway

Resource type: Video

BiVi theme: Pathways https://tess.elixir-europe.org/materials/bivi-theme-pathways Prof Tom Freeman discusses bio-visualisation within the Pathway theme at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Prof. Tom Freeman Pathway or network Pathway 2017-02-02
Visualization of Biomolecular Structures: State of the Art

Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on...

Keywords: Molecular, Information visualisation

Resource type: Slideshow

Visualization of Biomolecular Structures: State of the Art https://tess.elixir-europe.org/materials/visualization-of-biomolecular-structures-state-of-the-art Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures.Categories and Subject Descriptors (according to ACM CCS): I.3.5 [Computer Graphics]: Computational Geometry and Object Modeling-Curve, surface, solid, and object representations Created at: EuroVis 2015. Barbara Kozlikova Michael Krone Molecular, Information visualisation 2017-02-28
SeqMonk: Using visualisation to identify errors and biases in genome scale sequencing data

The increasing scale and complexity of genome scale studies has led to more widespread use of unsupervised analysis pipelines and reduced inspection and sanity checking of the underlying data.  Here we will illustrate how the use of interactive visualisation tools along with an explorative...

Keywords: Genome

Resource type: Video

SeqMonk: Using visualisation to identify errors and biases in genome scale sequencing data https://tess.elixir-europe.org/materials/seqmonk-using-visualisation-to-identify-errors-and-biases-in-genome-scale-sequencing-data The increasing scale and complexity of genome scale studies has led to more widespread use of unsupervised analysis pipelines and reduced inspection and sanity checking of the underlying data.  Here we will illustrate how the use of interactive visualisation tools along with an explorative approach to analysis can identify problems which would otherwise go undetected by standard pipelines. Created at: 3rd BiVi Annual Meeting (2017). Dr. Simon Andrews Genome 2017-05-15