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Contributors: Prof. Tom Freeman  or Michael Krone  or Oliver Davis  or Portada: Enrique Sahagún   or Jaime Morris 


MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools

This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa.

Scientific topics: Computational biology, Mathematics

Keywords: ComputationalBiology, Neuroscience, complex systems, Mathematics

Resource type: Notes, Scripts

MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools https://tess.elixir-europe.org/materials/mathematics-boot-camp-introduction-to-complex-systems-tools This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa. Felix Almonte Collins Assisi Frederick Carver Gautam Vallabha Jaime Morris Ajay Pillai Armin Fuchs Computational biology Mathematics ComputationalBiology, Neuroscience, complex systems, Mathematics Undergraduate students
Bioinformática con Ñ

"Bioinformática con Ñ" is a project born in 2013 aimed to provide specialized educational bibliography on Bioinformatics for Spanish speakers. The first release, published in 2014 and edited by Álvaro Sebastián and Alberto Pascual-García, consists on more than 500 pages where the following...

Scientific topics: Systems biology, Bioinformatics

Keywords: introduction to bioinformatics, structural biology, biomolecular databases, Systems biology, phylogenetics, Programming, Sequence Analysis, DNA RNA, Virtual Screening, molecular evolution, molecular dynamics, Molecular docking, normal modes analysis, Proteins, protein folding, protein structure alignment, chromatin structure, intrinsically disordered proteins, data minning, R-programming, parallel computing, bibliography management

Resource type: Book

Bioinformática con Ñ https://tess.elixir-europe.org/materials/bioinformatica-con-n "Bioinformática con Ñ" is a project born in 2013 aimed to provide specialized educational bibliography on Bioinformatics for Spanish speakers. The first release, published in 2014 and edited by Álvaro Sebastián and Alberto Pascual-García, consists on more than 500 pages where the following matters are covered: biomedical databases, sequence analysis, phylogeny and evolution, structural biology, including diverse topics such as docking, virtual screening or molecular dynamics, statistics and R, systems biology, programming skills, data mining, parallel computation, bibliography management and science article writing. Portada: Enrique Sahagún Systems biology Bioinformatics introduction to bioinformatics, structural biology, biomolecular databases, Systems biology, phylogenetics, Programming, Sequence Analysis, DNA RNA, Virtual Screening, molecular evolution, molecular dynamics, Molecular docking, normal modes analysis, Proteins, protein folding, protein structure alignment, chromatin structure, intrinsically disordered proteins, data minning, R-programming, parallel computing, bibliography management Anyone interested in bioinformatics
BiVi theme: Pathways

Prof Tom Freeman discusses bio-visualisation within the Pathway theme at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Scientific topics: Pathway or network

Keywords: Pathway

Resource type: Video

BiVi theme: Pathways https://tess.elixir-europe.org/materials/bivi-theme-pathways Prof Tom Freeman discusses bio-visualisation within the Pathway theme at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Prof. Tom Freeman Pathway or network Pathway 2017-02-02
Visualization of Biomolecular Structures: State of the Art

Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on...

Keywords: Molecular, Information visualisation

Resource type: Slideshow

Visualization of Biomolecular Structures: State of the Art https://tess.elixir-europe.org/materials/visualization-of-biomolecular-structures-state-of-the-art Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures.Categories and Subject Descriptors (according to ACM CCS): I.3.5 [Computer Graphics]: Computational Geometry and Object Modeling-Curve, surface, solid, and object representations Created at: EuroVis 2015. Barbara Kozlikova Michael Krone Molecular, Information visualisation 2017-02-28
Visualising dynamic genetics in human populations

Genetic and environmental variation affect all complex human traits and disorders. Recent large-scale genome-wide association studies have identified some of the specific genetic variants, and we often assume these associations will hold true irrespective of context. However, our research shows...

Keywords: Populations

Resource type: Video

Visualising dynamic genetics in human populations https://tess.elixir-europe.org/materials/visualising-dynamic-genetics-in-human-populations Genetic and environmental variation affect all complex human traits and disorders. Recent large-scale genome-wide association studies have identified some of the specific genetic variants, and we often assume these associations will hold true irrespective of context. However, our research shows that the relationship between genotype and phenotype can change across a lifetime or in different environments. For example, some genetic variants may have larger effects in adulthood or in the centre of cities. Data visualisation plays a vital role in bringing researchers together across disciplines to understand these dynamic patterns of gene-environment interaction. Created at: 3rd BiVi Annual Meeting (2017). Oliver Davis Populations 2017-05-15