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Contributors: Michael Ball  or Prof. Michael J E Sternberg  or Frederick Carver  or Dr. Ting Wang 


MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools

This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa.

Scientific topics: Computational biology, Mathematics

Keywords: ComputationalBiology, Neuroscience, complex systems, Mathematics

Resource type: Notes, Scripts

MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools https://tess.elixir-europe.org/materials/mathematics-boot-camp-introduction-to-complex-systems-tools This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa. Felix Almonte Collins Assisi Frederick Carver Gautam Vallabha Jaime Morris Ajay Pillai Armin Fuchs Computational biology Mathematics ComputationalBiology, Neuroscience, complex systems, Mathematics Undergraduate students
Epigenome Browser

Ting Wang (http://wang.wustl.edu/) addresses many of the challenges of navigating the complexity of genomic data and showcases the WashU Epigenome Browser that he is developing. The browser aims to give investigators maximum flexibility to explore and navigate the available genomic data in...

Keywords: Genome, Molecular

Resource type: Slideshow, Video

Epigenome Browser https://tess.elixir-europe.org/materials/epigenome-browser Ting Wang (http://wang.wustl.edu/) addresses many of the challenges of navigating the complexity of genomic data and showcases the WashU Epigenome Browser that he is developing. The browser aims to give investigators maximum flexibility to explore and navigate the available genomic data in multiple tracks, upload their own data as well as explore long-range interactions. He also highlights the need for the genome browsers to act as community resources and bioinformatics engines with the ability to analyse the mined data. This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license. Created at: VIZBI 2013. Dr. Ting Wang Genome, Molecular 2017-01-31
BiVi theme: Molecular

Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Keywords: Molecular

Resource type: Video

BiVi theme: Molecular https://tess.elixir-europe.org/materials/bivi-theme-molecular Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Prof. Michael J E Sternberg Molecular 2017-02-01
BBSRC: Data and Data Visualisation

Michael Ball from BBSRC's closing remarks on Data and Data Visualisation from 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Scientific topics: Phylogenetics, Pathway or network

Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Information visualisation

Resource type: Video

BBSRC: Data and Data Visualisation https://tess.elixir-europe.org/materials/bbsrc-data-and-data-visualisation Michael Ball from BBSRC's closing remarks on Data and Data Visualisation from 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Michael Ball Phylogenetics Pathway or network Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Information visualisation 2017-02-01
BiVi theme: Molecular - Structural molecular graphics

Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting.

Keywords: Molecular

Resource type: Slideshow

BiVi theme: Molecular - Structural molecular graphics https://tess.elixir-europe.org/materials/bivi-theme-molecular-structural-molecular-graphics Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting. Prof. Michael J E Sternberg Molecular 2017-02-03
EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games

In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of...

Keywords: Molecular

Resource type: Video

EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games https://tess.elixir-europe.org/materials/ezmol-and-bioblox-from-resources-for-protein-modelling-to-educational-computer-games In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of protein structures. In collaboration with Frederic Fol Leymarie, William Latham and their team at Goldsmiths, we have developed the BioBlox suite of scientific-based computer games based around protein docking. BioBox3D is a serious crowd-sourced game for predicting protein/protein docking. BioBlox2D is a fun-to-play game with scientific content for phone/tablet inspired by the recognition between proteins and small molecules. Finally, BioBloxVR is a virtual reality environment for protein docking inspired by BioBlox3D. We are exploring the opportunities for EzMol and BioBlox as educational resources. The projects were supported by the BBSRC. Created at: 3rd BiVi Annual Meeting (2017). Prof. Michael J E Sternberg Molecular 2017-05-15