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6 materials found

Contributors: Martin Krzywinski  or Dr. Simon Tomlinson  or Dr. Manuel Corpas  or Anatole Chessel  or Dr. Roy Ruddle 

Introductory image processing on biological images using python.

A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples.

Resource type: Jupyter notebook, PDF

Introductory image processing on biological images using python. https://tess.elixir-europe.org/materials/introductory-image-processing-on-biological-images-using-python A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples. Anatole Chessel Volker Baecker Bioimage Analysts Image Analysts Computer Vision scientists bioinformaticians computational scientists Biophysicists Biologists Microscopists Python for Biologists PhD students
Keynote on Visual Design Principles

Martin Krzywinski (http://mkweb.bcgsc.ca/) gives a great primer on the key principles of effective visual design in biological sciences. During the talk he highlights the principles with examples from various peer-reviewed publications and discusses the practical aspects of effective figure...

Keywords: Genome, HCI, Information visualisation, Communication

Resource type: Video

Keynote on Visual Design Principles https://tess.elixir-europe.org/materials/keynote-on-visual-design-principles Martin Krzywinski (http://mkweb.bcgsc.ca/) gives a great primer on the key principles of effective visual design in biological sciences. During the talk he highlights the principles with examples from various peer-reviewed publications and discusses the practical aspects of effective figure design.This video was filmed and distributed with permission under a Creative Commons license. Created at: VIZBI 2013. Martin Krzywinski Genome, HCI, Information visualisation, Communication 2017-01-31
Leeds Virtual Microscope and Orchestral

Dr Roy Ruddle discusses large displays for visualisation and the Leeds Virtual Microscope and Orchestral tools at 1st BiVi in 2014. Posters presented regarding the two tools discussed are also included. Created at: 1st BiVi Annual Meeting.

Keywords: Genome

Resource type: Poster, Video

Leeds Virtual Microscope and Orchestral https://tess.elixir-europe.org/materials/leeds-virtual-microscope-and-orchestral Dr Roy Ruddle discusses large displays for visualisation and the Leeds Virtual Microscope and Orchestral tools at 1st BiVi in 2014. Posters presented regarding the two tools discussed are also included. Created at: 1st BiVi Annual Meeting. Dr. Roy Ruddle Genome 2017-02-02
Revise and Redraw—Visual Design Principles for Scientific Data

Martin Krzywinski's keynote from 1st BiVi in 2014. He discusses visual design principles and communicating effectively in pictures.This talk distills core concepts of information design into practical guidelines for creating scientific figures. We will explain how to generate visual vocabularies...

Keywords: HCI, Communication

Resource type: Video

Revise and Redraw—Visual Design Principles for Scientific Data https://tess.elixir-europe.org/materials/revise-and-redraw-visual-design-principles-for-scientific-data Martin Krzywinski's keynote from 1st BiVi in 2014. He discusses visual design principles and communicating effectively in pictures.This talk distills core concepts of information design into practical guidelines for creating scientific figures. We will explain how to generate visual vocabularies with graphical elements, combine them into phrases, and package them into a complete figure, the visual equivalent of a paragraph. We show how effective designs for this composition are underpinned by conclusions from studies in visual perception and awareness. Created at: 1st BiVi Annual Meeting. Martin Krzywinski HCI, Communication 2017-02-02
GeneProf Visualisations

Dr Simon Tomlinson discusses the GeneProf visualisation system at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Keywords: Genome, Molecular

Resource type: Video

GeneProf Visualisations https://tess.elixir-europe.org/materials/geneprof-visualisations Dr Simon Tomlinson discusses the GeneProf visualisation system at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Dr. Simon Tomlinson Genome, Molecular 2017-02-02
BioJS

Dr Manuel Corpas discusses the BioJS Javascript component library at the 1st BiVi Annual Meeting in 2014. Created at: 1st BiVi Annual Meeting.

Scientific topics: Phylogenetics, Pathway or network

Keywords: Anatomy Physiology and Atlases, Genome, Molecular, Pathway, Phylogenetics

Resource type: Video

BioJS https://tess.elixir-europe.org/materials/biojs-6f4125d4-aca1-407d-b0c7-02345f3b3900 Dr Manuel Corpas discusses the BioJS Javascript component library at the 1st BiVi Annual Meeting in 2014. Created at: 1st BiVi Annual Meeting. Dr. Manuel Corpas Phylogenetics Pathway or network Anatomy Physiology and Atlases, Genome, Molecular, Pathway, Phylogenetics 2016-12-08