Register training material
7 materials found

Difficulty level: Beginner 

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Contributors: Björn Grüning  or Marek Vrbacky  or Dr. Simon Andrews  or Emily Angiolini 


Hands-on for 'Label-free versus Labelled - How to Choose Your Quantitation Method' tutorial

The questions this addresses are:
- What are benefits and drawbacks of different quantitation methods?
- How to choose which quantitation method bests suits my need?

\nThe objectives are:
- Choose your quantitation method.

Scientific topics: Proteomics

Keywords: proteomics, DDA

Resource type: hands-on tutorial

Hands-on for 'Peptide and Protein ID using SearchGUI and PeptideShaker' tutorial

The questions this addresses are:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?

\nThe objectives are:
- Protein identification from LC-MS/MS raw files.

Scientific topics: Proteomics

Keywords: proteomics, DDA

Resource type: hands-on tutorial

Hands-on for 'Protein FASTA Database Handling' tutorial

The questions this addresses are:
- How to download protein FASTA databases of a certain organism?
- How to download a contaminant database?
- How to create a decoy database?
- How to combine databases?

\nThe objectives are:
- Creation of a protein FASTA database ready for use with...

Scientific topics: Proteomics

Keywords: proteomics, DDA

Resource type: hands-on tutorial

Hands-on for 'Mass spectrometry imaging: Loading and exploring MSI data' tutorial

The questions this addresses are:
- Did the tryptic digestions work?
- Is there an intensity gradient in the data?
- How good is the m/z accuracy?

\nThe objectives are:
- How to upload an imzML file into Galaxy
- Getting an overview of the MSI data with the MSI quality control tool
- How...

Scientific topics: Proteomics

Keywords: proteomics, mouse, imaging

Resource type: hands-on tutorial

Hands-on for 'Galaxy 101' tutorial

The questions this addresses are:
- Which coding exon has the highest number of single nucleotide polymorphisms (SNPs) on human chromosome 22?

\nThe objectives are:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
-...

Keywords: introduction

Resource type: hands-on tutorial

Hands-on for 'From peaks to genes' tutorial

The questions this addresses are:
- How to use Galaxy?
- How to get from peak regions to a list of gene names?

\nThe objectives are:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
- Learn how histories work
-...

Keywords: introduction

Resource type: hands-on tutorial

Train the trainer

Five PowerPoint presentations and an Excel worksheet for a Train the Trainer course developed by Chris Taylor while at the Earlham Institute working for the National Institutes of Science's Bioinformatics and Biomathematics Training hub. The five slide decks cover pedagogical theory, trainer...

Scientific topics: Bioinformatics, Computational biology

Keywords: training, pedagogy