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Contributors: Björn Grüning  or Manimozhiyan Arumugam  or Marek Vrbacky  or Nils Peder Willassen  or Ms. Yo Yehudi  or Pip Griffin  or Prof. Richard Baldock  or Erik Hjerde  or Dr. A.J. Pretorius 

Galaxy Proteomics workshop Prague 2018

Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic

Scientific topics: Proteomics

Keywords: Galaxy, training, proteomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Galaxy Proteomics workshop Prague 2018 https://tess.elixir-europe.org/materials/galaxy-proteomics-workshop-prague-2018 Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic Andrea Argentini Frederik Coppens Pavel Dvorak Matthias Fahrner Melanie Foell Björn Grüning Martin Hubalek Hana Pergl Sustkova Marek Vrbacky Proteomics Galaxy, training, proteomics, eLearning, EeLP life scientists Researchers PhD Students
Hands-on workshop in Marine Metagenomics

Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway

Scientific topics: Marine biology, Metagenomics, Genomics

Keywords: Marine Metagenomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Hands-on workshop in Marine Metagenomics https://tess.elixir-europe.org/materials/hands-on-workshop-in-marine-metagenomics Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway Erik Hjerde Nils Peder Willassen Espen Aberg Espen Mikal Robertsen Marine biology Metagenomics Genomics Marine Metagenomics, eLearning, EeLP Researchers Master students PhD students
Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

Scientific topics: Data mining, Natural language processing, Metagenomics, Microbial ecology

Text-mining exercises https://tess.elixir-europe.org/materials/text-mining-exercises Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies. Manimozhiyan Arumugam Data mining Natural language processing Metagenomics Microbial ecology Bioinformaticians Biologists
BiVi theme: Anatomy, Physiology and Atlases

Prof Richard Baldock discusses bio-visualisation within the Anatomy, Physiology and Atlases theme Created at: 1st BiVi Annual Meeting.

Keywords: Anatomy Physiology and Atlases

Resource type: Video

BiVi theme: Anatomy, Physiology and Atlases https://tess.elixir-europe.org/materials/bivi-theme-anatomy-physiology-and-atlases Prof Richard Baldock discusses bio-visualisation within the Anatomy, Physiology and Atlases theme Created at: 1st BiVi Annual Meeting. Prof. Richard Baldock Anatomy Physiology and Atlases 2017-02-01
Cell lineage visualisation

Dr A J Pretorius discusses Cell-o-pane, a cell lineage visulaisation tool at 1st BiVi in 2014. As assoicated poster also presented a the meeting is included. Created at: 1st BiVi Annual Meeting.

Keywords: Cells and Organisms, Molecular

Resource type: Video

Cell lineage visualisation https://tess.elixir-europe.org/materials/cell-lineage-visualisation Dr A J Pretorius discusses Cell-o-pane, a cell lineage visulaisation tool at 1st BiVi in 2014. As assoicated poster also presented a the meeting is included. Created at: 1st BiVi Annual Meeting. Dr. A.J. Pretorius Cells and Organisms, Molecular 2017-02-01
BiVi theme: Anatomy, Physiology and Atlases 2015

Richard Baldock and Bernard de Bono introduce session on bio-visualisation in Anatomy, Physiology and Atlases at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting.

Keywords: Anatomy Physiology and Atlases

Resource type: Slideshow

BiVi theme: Anatomy, Physiology and Atlases 2015 https://tess.elixir-europe.org/materials/bivi-theme-anatomy-physiology-and-atlases-2015 Richard Baldock and Bernard de Bono introduce session on bio-visualisation in Anatomy, Physiology and Atlases at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting. Prof. Richard Baldock Anatomy Physiology and Atlases 2017-02-03
Intermine 2.0

Yo Yehudi describes Intermine, an open source data warehouse and analysis system at 2nd BiVi in 2015 Created at: 2nd BiVi Annual Meeting.

Scientific topics: Database management

Keywords: Databases

Resource type: Slideshow

Intermine 2.0 https://tess.elixir-europe.org/materials/intermine-2-0 Yo Yehudi describes Intermine, an open source data warehouse and analysis system at 2nd BiVi in 2015 Created at: 2nd BiVi Annual Meeting. Ms. Yo Yehudi Database management Databases 2017-02-03
Model organism analysis using Intermine

Poster presented at 3rd BiVi in April 2017.InterMine is an open source data warehouse based in the University of Cambridge. We integrate data from disparate sources and provide a single unified interface, allowing you to access your data via an easy-to-use webapp or API. InterMine has over 30...

Keywords: Cells and Organisms

Resource type: Poster

Model organism analysis using Intermine https://tess.elixir-europe.org/materials/model-organism-analysis-using-intermine Poster presented at 3rd BiVi in April 2017.InterMine is an open source data warehouse based in the University of Cambridge. We integrate data from disparate sources and provide a single unified interface, allowing you to access your data via an easy-to-use webapp or API. InterMine has over 30 different instances worldwide, covering model organisms, plants, mitochondrial DNA, drug targeting, and more.  Created at: 3rd BiVi Annual Meeting (2017). Ms. Yo Yehudi Cells and Organisms 2017-05-30
Researcher Training Day for Life Scientists_ Rad-seq with Stacks in Galaxy

This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes.

Keywords: bioinformatics

Researcher Training Day for Life Scientists_ Rad-seq with Stacks in Galaxy https://tess.elixir-europe.org/materials/researcher-training-day-for-life-scientists_-rad-seq-with-stacks-in-galaxy This materials are associated to the Galaxy Australasia Meeting 2017 kicks off on Friday 3rd February with the Researcher Training Day. This event targets life scientists working with Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and microbial genomes. Pip Griffin Sonika Tyagi bioinformatics Biologists