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10 materials found

Contributors: Björn Grüning  or Manimozhiyan Arumugam  or Celia van Gelder  or Marek Vrbacky  or Jamie Edwards  or Nils Peder Willassen  or Frederick Carver  or Prof. Michael J E Sternberg 


MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools

This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa.

Scientific topics: Computational biology, Mathematics

Keywords: ComputationalBiology, Neuroscience, complex systems, Mathematics

Resource type: Notes, Scripts

MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools https://tess.elixir-europe.org/materials/mathematics-boot-camp-introduction-to-complex-systems-tools This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa. Felix Almonte Collins Assisi Frederick Carver Gautam Vallabha Jaime Morris Ajay Pillai Armin Fuchs Computational biology Mathematics ComputationalBiology, Neuroscience, complex systems, Mathematics Undergraduate students
Galaxy Proteomics workshop Prague 2018

Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic

Scientific topics: Proteomics

Keywords: Galaxy, training, proteomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Galaxy Proteomics workshop Prague 2018 https://tess.elixir-europe.org/materials/galaxy-proteomics-workshop-prague-2018 Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic Andrea Argentini Frederik Coppens Pavel Dvorak Matthias Fahrner Melanie Foell Björn Grüning Martin Hubalek Hana Pergl Sustkova Marek Vrbacky Proteomics Galaxy, training, proteomics, eLearning, EeLP life scientists Researchers PhD Students
ELIXIR eLearning definitions

Materials from the asynchronous learning course "ELIXIR eLearning definitions"

Keywords: eLearning, training, EeLP

Resource type: course materials, Training materials, Documentation

ELIXIR eLearning definitions https://tess.elixir-europe.org/materials/elixir-elearning-definitions Materials from the asynchronous learning course "ELIXIR eLearning definitions" Brane Leskosek Jure Dimec Eija Korpelainen Teresa Attwood Sarah Morgan Nicola Mulder Celia van Gelder Patricia Palagi eLearning, training, EeLP Researchers teachers Trainers
Hands-on workshop in Marine Metagenomics

Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway

Scientific topics: Marine biology, Metagenomics, Genomics

Keywords: Marine Metagenomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Hands-on workshop in Marine Metagenomics https://tess.elixir-europe.org/materials/hands-on-workshop-in-marine-metagenomics Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway Erik Hjerde Nils Peder Willassen Espen Aberg Espen Mikal Robertsen Marine biology Metagenomics Genomics Marine Metagenomics, eLearning, EeLP Researchers Master students PhD students
Implementation of Data Management Plans & Data Stewardship in practice

Materials from the ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, Sept 11, 2018 at ECCB2018, Athens, Greece.

Scientific topics: Data submission, annotation and curation, Data management

Keywords: data management, data stewardship, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Implementation of Data Management Plans & Data Stewardship in practice https://tess.elixir-europe.org/materials/implementation-of-data-management-plans-data-stewardship-in-practice Materials from the ELIXIR workshop “Implementation of Data Management Plans & Data Stewardship in practice”, Sept 11, 2018 at ECCB2018, Athens, Greece. Celia van Gelder Roland Krause Mateusz Kuzak Brane Leskosek Marko Vidak Robert Pergl Marek Suchanek Jan Slifka Vojtech Knaisl Data submission, annotation and curation Data management data management, data stewardship, eLearning, EeLP bioinformaticians data stewards
Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

Scientific topics: Data mining, Natural language processing, Metagenomics, Microbial ecology

Text-mining exercises https://tess.elixir-europe.org/materials/text-mining-exercises Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies. Manimozhiyan Arumugam Data mining Natural language processing Metagenomics Microbial ecology Bioinformaticians Biologists
Train the trainer

Train the Trainer course materials

Scientific topics: Bioinformatics, Computational biology

Keywords: training, pedagogy

Train the trainer https://tess.elixir-europe.org/materials/train-the-trainer Train the Trainer course materials Emily Angiolini Jamie Edwards Paul Yorke Bioinformatics Computational biology training, pedagogy Trainers
BiVi theme: Molecular

Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Keywords: Molecular

Resource type: Video

BiVi theme: Molecular https://tess.elixir-europe.org/materials/bivi-theme-molecular Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Prof. Michael J E Sternberg Molecular 2017-02-01
BiVi theme: Molecular - Structural molecular graphics

Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting.

Keywords: Molecular

Resource type: Slideshow

BiVi theme: Molecular - Structural molecular graphics https://tess.elixir-europe.org/materials/bivi-theme-molecular-structural-molecular-graphics Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015. Created at: 2nd BiVi Annual Meeting. Prof. Michael J E Sternberg Molecular 2017-02-03
EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games

In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of...

Keywords: Molecular

Resource type: Video

EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games https://tess.elixir-europe.org/materials/ezmol-and-bioblox-from-resources-for-protein-modelling-to-educational-computer-games In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of protein structures. In collaboration with Frederic Fol Leymarie, William Latham and their team at Goldsmiths, we have developed the BioBlox suite of scientific-based computer games based around protein docking. BioBox3D is a serious crowd-sourced game for predicting protein/protein docking. BioBlox2D is a fun-to-play game with scientific content for phone/tablet inspired by the recognition between proteins and small molecules. Finally, BioBloxVR is a virtual reality environment for protein docking inspired by BioBlox3D. We are exploring the opportunities for EzMol and BioBlox as educational resources. The projects were supported by the BBSRC. Created at: 3rd BiVi Annual Meeting (2017). Prof. Michael J E Sternberg Molecular 2017-05-15