Content provider: VIB Bioinformatics Core
The first day (20 May 2021) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify...
Keywords: Containers, Nextflow
Resource type: Training materials
workshop materials (mainly) in DSL2 aiming to get familiar with the Nextflow syntax by explaining basic concepts and building a simple RNAseq pipeline. Highlights also reproducibility aspects with adding containers (docker & singularity). Slides available...
Scientific topics: Workflows
Keywords: Nextflow, DSL2
Resource type: Presentation, course materials
This training session will provide the basics of protein structure determination and how this information is stored in databases. We will explore and search in online databases containing protein structure information. With the aid of the Yasara View program we will visualize the structure....
Operations: Visualisation
Keywords: Protein structure visualisation
Resource type: e-learning
Best practices for writing reproducible data-analysis
Creating a reproducible and re-usable data-analysis environment with Rstudio
Input: https://github.com/vibbits/RDM-LS
Output: https://github.com/vibbits/RDM-LS-solution
Scientific topics: Data management, Data architecture, analysis and design
Keywords: Data analysis
Resource type: Presentation
Valorisation and IP
- Basics of Tech Transfer and IPR from an academic perspective
- Insights as to:
- Why is it important when handling and managing research data?
- How do IP rights fit in FAIR data principles
- When to safeguard data for proprietary protection?
- Where/how...
Scientific topics: Data management
Keywords: intellectual property protection
Resource type: Presentation
- why preserve data
- what data should be preserved
- how share data
- where to deposit your data
- Fairsharing, re3data
- ELIXIR Core Resources
- Data Formats
- Generic archives
Scientific topics: Data management, Data submission, annotation, and curation
Keywords: data formats, ELIXIR Core resources, FAIR data submission
Resource type: Presentation
- how to find existing data (OmicsDI, pubmed, BioStudies, Google Data search, Data Management Hub)
- licenses
- datasets as first-class research products
- research software as first-class research products
- data citations
Scientific topics: Data management
Keywords: data licenses, software licenses, data journal
Resource type: Presentation
The content provided via this link was used in the training on 9 and 10 November 2020 organized by Ghent University and Elixir Belgium and VIB in collaboration with Interreg Vlaanderen-Nederland: https://training.vib.be/all-trainings/research-data-management-life-sciences.
Scientific topics: Data management
Resource type: Presentation, Vignette, Video
Writing a Data Management Plan
A good data management plan is crucial for any scientist and researcher. In this course, you will learn how to write one. You will find out how you can prepare, handle and share your research data.
Scientific topics: Data management
Resource type: e-learning
Scop3P is available as a web-interface for PTM visualisation and can be accessed at https://iomics.ugent.be/scop3p
Search Scop3P with Swiss-Prot accession/ID, protein name, PDB ID, ProteomeXchange ID or by keywords