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11 materials found

Authors: Mick Watson  or Malachi Griffith 


Informatics for RNA-Seq Analysis 2018 Module 4-Reference Free Alignment

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2018 Module 4-Reference Free Alignment https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2018-module-4-reference-free-alignment Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate Students
Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2018-module-1-introduction-to-rna-sequencing-analysis Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Biologists, Genomicists, Computer Scientists Graduate students Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-5-isoform-discovery-and-alternative-expression Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-4-reference-free-alignment Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate Students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 1-Introduction to RNA Sequencing Analysis

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2017 Module 1-Introduction to RNA Sequencing Analysis https://tess.elixir-europe.org/materials/informatics-for-rna-seq-analysis-2017-module-1-introduction-to-rna-sequencing-analysis Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
High-Throughput Biology 2017 Module 11-Isoform Discovery and Alternative Expression

Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.

High-Throughput Biology 2017 Module 11-Isoform Discovery and Alternative Expression https://tess.elixir-europe.org/materials/high-throughput-biology-2017-module-11-isoform-discovery-and-alternative-expression Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome. Graduate Students Researchers Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
High-Throughput Biology 2017 Module 10-Reference Free Alignment

Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.

High-Throughput Biology 2017 Module 10-Reference Free Alignment https://tess.elixir-europe.org/materials/high-throughput-biology-2017-module-10-reference-free-alignment Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome. Graduate students Researchers Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
High-Throughput Biology 2017 Module 7-Introduction to RNA Sequencing Analysis

Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.

High-Throughput Biology 2017 Module 7-Introduction to RNA Sequencing Analysis https://tess.elixir-europe.org/materials/high-throughput-biology-2017-module-7-introduction-to-rna-sequencing-analysis Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome. Graduate students Researchers Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Working with Affymetrix CEL files in R

This tutorial shows how to download some public Affymetrix microarray data, load the data into R, calculate expression values and do some very simple plotting

Keywords: Affymetrix, Microarrays, R

Working with Affymetrix CEL files in R https://tess.elixir-europe.org/materials/working-with-affymetrix-cel-files-in-r This tutorial shows how to download some public Affymetrix microarray data, load the data into R, calculate expression values and do some very simple plotting Affymetrix, Microarrays, R Beginners PhD students Researchers 2014-01-14 2017-10-09
Simple plotting in R

This quick and simple tutorial demonstrates some of the easy plotting tools in the R core software. the data are in the "data" directory and come from an old two-colour microarray experiment where spots on the array were printed with different buffers, in different concentrations and with...

Keywords: Bioinformatics, Microarray data analysis, Plotting data, R, Visualisation

Simple plotting in R https://tess.elixir-europe.org/materials/simple-plotting-in-r This quick and simple tutorial demonstrates some of the easy plotting tools in the R core software. the data are in the "data" directory and come from an old two-colour microarray experiment where spots on the array were printed with different buffers, in different concentrations and with different pins.  Also, both channels Cy5 and Cy3 were spotted identically, and so the fold ratio for all spots should be 1 - this helps us see bias in the data Bioinformatics, Microarray data analysis, Plotting data, R, Visualisation Beginners PhD students Researchers Scientists 2014-01-14 2017-10-09
Quality Control of Illumina Sequencing data in the cloud

This course was created as part of the SeqAhead project and contains both powerpoint presentations and course materials that teach students how to set up an Amazon EC2 virtual machine, connect to it, download some Illumina data from  the short read archive (SRA), assess the quality of the data...

Keywords: Bioinformatics, Cloud, Next generation sequencing, Next generation sequencing data analysis, Ngs bioinformatics, Qc ngs data

Quality Control of Illumina Sequencing data in the cloud https://tess.elixir-europe.org/materials/quality-control-of-illumina-sequencing-data-in-the-cloud This course was created as part of the SeqAhead project and contains both powerpoint presentations and course materials that teach students how to set up an Amazon EC2 virtual machine, connect to it, download some Illumina data from  the short read archive (SRA), assess the quality of the data and learn to trim both bad quality bases and adapter sequences Bioinformatics, Cloud, Next generation sequencing, Next generation sequencing data analysis, Ngs bioinformatics, Qc ngs data Beginners 2014-01-13 2017-10-09