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8 materials found

Content provider: Galaxy Training 

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Resource type: Slides 

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Authors: Jared Simpson  or Eija Korpelainen  or Maria Victoria .  or Julie Sullivan  or bgruening 


Contributing to the Galaxy Training Material - Good practices to run a workshop

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Resource type: Slides

Contributing to the Galaxy Training Material - Good practices to run a workshop https://tess.elixir-europe.org/materials/contributing-to-the-galaxy-training-material-good-practices-to-run-a-workshop Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy. Questions of the tutorial: - What do we need to take care when running a workshop? - What are the good practices? Objectives of the tutorial: - Reflect on the things to do before, during and after a workshop
Galaxy Server administration - User, Group and Quota managment

Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - How does Galaxy manage users and groups? - How can I assign Quotas to specific users/groups? Objectives of the tutorial: - Learn the Galaxy user/group management and assign Quotas. - Understand...

Resource type: Slides

Galaxy Server administration - User, Group and Quota managment https://tess.elixir-europe.org/materials/galaxy-server-administration-user-group-and-quota-managment Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - How does Galaxy manage users and groups? - How can I assign Quotas to specific users/groups? Objectives of the tutorial: - Learn the Galaxy user/group management and assign Quotas. - Understand the Role Based Access Control (RBAC) of Galaxy.
Galaxy Server administration - Deployment and Platform options

Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - What options to deploy Galaxy do I have? - Which platforms are supported by Galaxy? - What requirements does Galaxy have? Objectives of the tutorial: - Learn about different options about Galaxy...

Resource type: Slides

Galaxy Server administration - Deployment and Platform options https://tess.elixir-europe.org/materials/galaxy-server-administration-deployment-and-platform-options Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - What options to deploy Galaxy do I have? - Which platforms are supported by Galaxy? - What requirements does Galaxy have? Objectives of the tutorial: - Learn about different options about Galaxy deployment. - Make an educated decision about your preferred deployment model.
Development in Galaxy - Galaxy Code Architecture

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - How is the Galaxy code structured? - What do the various other projects related to Galaxy do? - What...

Resource type: Slides

Development in Galaxy - Galaxy Code Architecture https://tess.elixir-europe.org/materials/development-in-galaxy-galaxy-code-architecture Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - How is the Galaxy code structured? - What do the various other projects related to Galaxy do? - What happens when I start Galaxy? Objectives of the tutorial: - Explore various aspects of the Galaxy codebase. - Understand the various top-level files and modules in Galaxy. - Understand how dependencies work in Galaxy's frontend and backend.
Development in Galaxy - Galaxy Interactive Environments

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What are Galaxy Interactive Environments (GIEs)? - How to enable GIEs in Galaxy? - How to develop your own...

Resource type: Slides

Development in Galaxy - Galaxy Interactive Environments https://tess.elixir-europe.org/materials/development-in-galaxy-galaxy-interactive-environments Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What are Galaxy Interactive Environments (GIEs)? - How to enable GIEs in Galaxy? - How to develop your own GIE? Objectives of the tutorial: - Implement a Hello-World Galaxy Interactive Environment
Development in Galaxy - Galaxy Interactive Tours

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a Galaxy Interactive Tour? - How to create a Galaxy Interactive Tour? Objectives of the...

Resource type: Slides

Development in Galaxy - Galaxy Interactive Tours https://tess.elixir-europe.org/materials/development-in-galaxy-galaxy-interactive-tours Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a Galaxy Interactive Tour? - How to create a Galaxy Interactive Tour? Objectives of the tutorial: - Discover what is a Galaxy Interactive Tour - Be able to create a Galaxy Interactive Tour - Be able to add a Galaxy Interactive Tour in a Galaxy instance
Galaxy Server administration - Advanced customisation of a Galaxy instance

Resources related to configuration and maintenance of Galaxy servers

Resource type: Slides

Galaxy Server administration - Advanced customisation of a Galaxy instance https://tess.elixir-europe.org/materials/galaxy-server-administration-advanced-customisation-of-a-galaxy-instance Resources related to configuration and maintenance of Galaxy servers
Galaxy Server administration - Docker and Galaxy

Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Docker? What is it? - How to use Docker? - How to integrate Galaxy in Docker to facilitate its deployment? Objectives of the tutorial: - Docker basics - Galaxy Docker image (usage) - Galaxy...

Resource type: Slides

Galaxy Server administration - Docker and Galaxy https://tess.elixir-europe.org/materials/galaxy-server-administration-docker-and-galaxy Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Docker? What is it? - How to use Docker? - How to integrate Galaxy in Docker to facilitate its deployment? Objectives of the tutorial: - Docker basics - Galaxy Docker image (usage) - Galaxy Docker (internals) - Galaxy flavours