Register training material
8 materials found

Authors: Boo Virk  or yvanlebras 


Variant Analysis - Introduction to Variant analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced

Variant Analysis - Introduction to Variant analysis https://tess.elixir-europe.org/materials/variant-analysis-introduction Exome sequencing means that all protein-coding genes in a genome are sequenced
Epigenetics - Introduction to DNA Methylation data analysis

DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.

Epigenetics - Introduction to DNA Methylation data analysis https://tess.elixir-europe.org/materials/epigenetics-introduction DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Sequence analysis - RAD-Seq to construct genetic maps

Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data for a genetic map study? Objectives of the tutorial: - SNP calling from RAD sequencing data - Find and correct haplotypes - Create input files for genetic map building software

Resource type: Tutorial

Sequence analysis - RAD-Seq to construct genetic maps https://tess.elixir-europe.org/materials/analysis-of-sequences-rad-seq-to-construct-genetic-maps Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data for a genetic map study? Objectives of the tutorial: - SNP calling from RAD sequencing data - Find and correct haplotypes - Create input files for genetic map building software
Sequence analysis - RAD-Seq de-novo data analysis

Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data without a reference genome for a population genomics study? Objectives of the tutorial: - Analysis of RAD sequencing data without a reference genome - SNP calling from RAD sequencing data - Calculate...

Resource type: Tutorial

Sequence analysis - RAD-Seq de-novo data analysis https://tess.elixir-europe.org/materials/analysis-of-sequences-rad-seq-de-novo-data-analysis Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data without a reference genome for a population genomics study? Objectives of the tutorial: - Analysis of RAD sequencing data without a reference genome - SNP calling from RAD sequencing data - Calculate population genomics statistics from RAD sequencing data
Sequence analysis - RAD-Seq Reference-based data analysis

Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data using a reference genome for a population genomics study? Objectives of the tutorial: - Analysis of RAD sequencing data using a reference genome - SNP calling from RAD sequencing data - Calculate population...

Resource type: Tutorial

Sequence analysis - RAD-Seq Reference-based data analysis https://tess.elixir-europe.org/materials/analysis-of-sequences-rad-seq-reference-based-data-analysis Analyses of sequences Questions of the tutorial: - How to analyze RAD sequencing data using a reference genome for a population genomics study? Objectives of the tutorial: - Analysis of RAD sequencing data using a reference genome - SNP calling from RAD sequencing data - Calculate population genomics statistics from RAD sequencing data
An Introduction to Mathematical Modelling

This course provides an introduction to the concepts of modelling biological systems. It is intended for biologists who have no experience in modelling but would like to know how it might apply to their area of research. The course provides a complete background to the history of modelling and...

An Introduction to Mathematical Modelling https://tess.elixir-europe.org/materials/an-introduction-to-mathematical-modelling This course provides an introduction to the concepts of modelling biological systems. It is intended for biologists who have no experience in modelling but would like to know how it might apply to their area of research. The course provides a complete background to the history of modelling and the different approaches through which a biological system can be approximated by mathematical methods. The course also provides a practical introduction to the [COPASI](http://copasi.org/) modelling environment.
Quality Control in Sequencing Experiments

This course looks at the different ways in which sequencing based studies can fail and the options for visualisation and QC which allow you to identify and diagnose these failures at an early stage. It is designed to be of use to anyone who is using sequencing as part of their research, not just...

Scientific topics: Quality affairs

Keywords: Babraham Institute

Quality Control in Sequencing Experiments https://tess.elixir-europe.org/materials/quality-control-in-sequencing-experiments This course looks at the different ways in which sequencing based studies can fail and the options for visualisation and QC which allow you to identify and diagnose these failures at an early stage. It is designed to be of use to anyone who is using sequencing as part of their research, not just those who are running sequencing facilities. Quality affairs Babraham Institute
Scientific Figure Design

This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and...

Scientific topics: Data visualisation

Keywords: Figure design, Babraham Institute

Scientific Figure Design https://tess.elixir-europe.org/materials/scientific-figure-design This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Data visualisation Figure design, Babraham Institute