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7 materials found

Authors: Anna Goldenberg  or abretaud 


Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers https://tess.elixir-europe.org/materials/bioinformatics-of-genomic-medicine-2018-module-7-identifying-integrative-subtypes-and-building-classifiers Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2017 Module 9-Clinical Data Integration

Course covers the bioinformatics tools required to analyze genomic data sets.

Bioinformatics for Cancer Genomics 2017 Module 9-Clinical Data Integration https://tess.elixir-europe.org/materials/bioinformatics-for-cancer-genomics-2017-module-9-clinical-data-integration Course covers the bioinformatics tools required to analyze genomic data sets. Graduate students Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2017 Module 7-Patient Similarity Fusion

Course covers various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2017 Module 7-Patient Similarity Fusion https://tess.elixir-europe.org/materials/bioinformatics-of-genomic-medicine-module-7-patient-similarity-fusion Course covers various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Graduate students Researchers Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Development in Galaxy - Prerequisites for building software/conda packages

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What does 'installing a software' means on a Linux architecture? - Why my compilations always fail? - How...

Resource type: Slides

Development in Galaxy - Prerequisites for building software/conda packages https://tess.elixir-europe.org/materials/development-in-galaxy-prerequisites-for-building-software-conda-packages Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What does 'installing a software' means on a Linux architecture? - Why my compilations always fail? - How to solve common compiling and installation issues? Objectives of the tutorial: - Learn how to compile and install tools using standard procedures. - Learn needed tricks to write conda build.sh files.
Development in Galaxy - Tool Shed: sharing Galaxy tools

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a Tool Shed? - How to install tools and workflows from a Tool Shed into a Galaxy instance? - What...

Resource type: Slides

Development in Galaxy - Tool Shed: sharing Galaxy tools https://tess.elixir-europe.org/materials/development-in-galaxy-tool-shed-sharing-galaxy-tools Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a Tool Shed? - How to install tools and workflows from a Tool Shed into a Galaxy instance? - What are the Tool Shed repository types? - How to publish with Planemo? Objectives of the tutorial: - Discover what is a Tool Shed - Be able to install tools and workflows from a Tool Shed into a Galaxy instance - Be able to publish tools with Planemo
Development in Galaxy - Tool development and integration into Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a tool for Galaxy? - How to build a tool/wrapper with the good practices? - How to deal with the...

Resource type: Tutorial

Development in Galaxy - Tool development and integration into Galaxy https://tess.elixir-europe.org/materials/development-in-galaxy-tool-development-and-integration-into-galaxy Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What is a tool for Galaxy? - How to build a tool/wrapper with the good practices? - How to deal with the tool environment? Objectives of the tutorial: - Discover what is a wrapper and its structure - Use the Planemo utilities to develop a good wrapper - Deal with the dependencies - Write functional tests - Make a tool ready for publishing in a ToolShed
Introduction to Galaxy Analyses - Options for using Galaxy

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience. Questions of the tutorial: - Which Galaxy instance should I use?

Resource type: Slides

Introduction to Galaxy Analyses - Options for using Galaxy https://tess.elixir-europe.org/materials/galaxy-introduction-options-for-using-galaxy Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience. Questions of the tutorial: - Which Galaxy instance should I use?