Register event
34 events found

Target audience: Those with programming expe...  or PhD students 

  • Best practices in HPC (sciCORE cluster)

    27 March 2019

    Basel, Switzerland

    Elixir node event
    Best practices in HPC (sciCORE cluster) https://tess.elixir-europe.org/events/best-practices-in-hpc-scicore-cluster Overview This one-day course is a follow-up to the sciCORE course "Introduction to HPC (sciCORE cluster)". 2019-03-27 09:00:00 UTC 2019-03-27 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NeLS hands-on workshop

    27 March 2019

    Oslo, Norway

    Elixir node event
    NeLS hands-on workshop https://tess.elixir-europe.org/events/nels-hands-on-workshop The sixth in a series of hands-on bioinformatics workshops organized in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customizable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-03-27 10:00:00 UTC 2019-03-27 14:00:00 UTC ELIXIR UiO node Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway 0373 RNA-Seq Bioinformatics Data management university of Oslo [] PhD studentspost-docs 25 workshops_and_courses first_come_first_served []
  • First steps with R in Life Sciences

    2 - 3 April 2019

    Lausanne, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-be891d7c-9d78-4af4-a585-a82bfdbe1eb7 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2019-04-02 09:00:00 UTC 2019-04-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • SPHN Data Privacy and IT Security Training

    2 April 2019

    Basel, Switzerland

    Elixir node event
    SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training-df60adc9-02da-4152-a56d-f3d5fa73078d Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2019-04-02 09:00:00 UTC 2019-04-02 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Intermediate stats: data analysis in practice

    8 - 9 April 2019

    Lausanne, Switzerland

    Elixir node event
    Intermediate stats: data analysis in practice https://tess.elixir-europe.org/events/intermediate-stats-data-analysis-in-practice-c75a1c84-c1c3-4f2d-ae68-1d6b39e2a6c3 Overview Do you feel unable to statistically analyse data, despite having already followed an introduction course on statistics ? If yes, this course was created for you. 2019-04-08 09:00:00 UTC 2019-04-09 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    29 - 30 April 2019

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-61e3f31b-dcd2-48bf-b446-9a115382b002 Overview Among other genomic applications, Whole genome sequencing “WGS”, Whole Exome Sequencing “WES” and RNA sequencing are used for the detection of genomic variants. 2019-04-29 09:00:00 UTC 2019-04-30 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    2 May 2019

    Lausanne, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/shiny Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2019-05-02 09:00:00 UTC 2019-05-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    6 May 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2019-05-06 09:00:00 UTC 2019-05-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to openBIS

    7 May 2019

    Lausanne, Switzerland

    Elixir node event
    Introduction to openBIS https://tess.elixir-europe.org/events/introduction-to-openbis Overview openBIS is a combined data management platform, Electronic Laboratory Notebook, and Inventory Management System. 2019-05-07 09:00:00 UTC 2019-05-07 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps in Parallelization with OpenMP

    8 May 2019

    Basel, Switzerland

    Elixir node event
    First Steps in Parallelization with OpenMP https://tess.elixir-europe.org/events/first-steps-in-parallelization-with-openmp-1bbfd630-8e6e-424b-93c3-692f1df61027 Overview We currently live in the era of multicore computers, where almost every computing machine has many CPUs. In order to benefit from this computational power we need to devise programs explicitly written for parallel machines. 2019-05-08 09:00:00 UTC 2019-05-08 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR-EXCELERATE Train the trainer

    8 - 10 May 2019

    Basel, Switzerland

    Elixir node event
    ELIXIR-EXCELERATE Train the trainer https://tess.elixir-europe.org/events/elixir-excelerate-train-the-trainer-7b9d0389-490f-46f6-89af-697c998d655e ELIXIR-EXCELERATE is funded by the European Commission within the Research Infrastructures programme of Horizon 2020, grant agreement number 676559 Overview This course offers guidance, ideas and tips for designing training/teaching, 2019-05-08 09:00:00 UTC 2019-05-10 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Docker for reproducible computational research

    13 May 2019

    Bern, Switzerland

    Elixir node event
    Docker for reproducible computational research https://tess.elixir-europe.org/events/docker-for-reproducible-computational-research-4fbe7a5a-06bb-4c5f-8ae1-4fed251567d8 Overview Bioinformatics analysis usually involves a large number of software tools, reference data and pipelines used to elaborate the results. 2019-05-13 09:00:00 UTC 2019-05-13 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Live Long-Read sequencing and analysis!

    15 - 17 May 2019

    Fribourg, Switzerland

    Elixir node event
    Live Long-Read sequencing and analysis! https://tess.elixir-europe.org/events/live-long-read-sequencing-and-analysis More information soon 2019-05-15 09:00:00 UTC 2019-05-17 00:00:00 UTC SIB, Fribourg, Switzerland SIB Fribourg Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-software-carpentry-ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data & Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](https://elixir.mf.uni-lj.si/course/view.php?id=46)**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • First Steps with UNIX in Life Sciences

    28 May 2019

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-36cb482a-4e6a-4f85-a4f9-2f53b42cdea7 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2019-05-28 09:00:00 UTC 2019-05-28 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Statistical methods for big data in life sciences and health with R

    3 - 6 June 2019

    Lausanne, Switzerland

    Elixir node event
    Statistical methods for big data in life sciences and health with R https://tess.elixir-europe.org/events/statistical-methods-for-big-data-in-life-sciences-and-health-with-r Overview In this course, biologists, computational biologists and bioinformatics scientists will acquire the key competencies that they need when dealing with big data from the health and life sciences fields. 2019-06-03 09:00:00 UTC 2019-06-06 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation

    12 - 14 June 2019

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-ae907af5-87b3-4a91-a5d2-754012a06b7e Overview Usage of NGS is increasing in several biological fields due to a very rapid decrease in cost. However, it often results in hundreds of Gbs of data making the downstream analysis very challenging and requires bioinformatics skills. 2019-06-12 09:00:00 UTC 2019-06-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    19 June 2019

    Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-cac27254-dfeb-42a0-a82c-1ae2209b38c4 Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2019-06-19 09:00:00 UTC 2019-06-19 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • SIB PhD Training Network Annual Retreat

    24 - 26 June 2019

    Fribourg, Switzerland

    Elixir node event
    SIB PhD Training Network Annual Retreat https://tess.elixir-europe.org/events/sib-phd-training-network-annual-retreat-09268123-5621-4f87-b0bd-7ed24ab7783e This course is exclusively reserved to the members of the SIB PhD Training Network. 2019-06-24 09:00:00 UTC 2019-06-26 00:00:00 UTC SIB, Fribourg, Switzerland SIB Fribourg Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Genome assembly and annotation course 5

    1 - 5 July 2019

    Milan, Italy

    Elixir node event
    Genome assembly and annotation course 5 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-5 A **genome assembly and annotation course** will take place on **July 1-5, 2019** in **Milan, Italy**, hosted by the Italian ELIXIR Node in cooperation with other ELIXIR nodes that are involved in the ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and annotation experts in Europe will be teaching at the course. The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue with a step-by-step description of all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using Unix/Linux command line. After the course, the participants will have knowledge of commonly used assembly practices and tools. They will be able to run assembly and annotation projects on their own. **Prerequisites:** - **Working knowledge of Unix/Linux command line** - **As part of the course agenda, course participants will prepare a short presentation about their own projects.** Optionally, they may also bring their own data. **Instructions how to register for the course are available on the [ELIXIR-SI eLearning Platform (EELP)](https://elixir.mf.uni-lj.si/course/view.php?id=45).** You will be able to access the course after you register and your registration is approved by the course organizers. 2019-07-01 09:00:00 UTC 2019-07-05 17:00:00 UTC ELIXIR Italy University of Milano-Bicocca, Building U7, Lab 715, Milan, Italy University of Milano-Bicocca, Building U7, Lab 715 Milan Città Metropolitana di Milano Italy Genomics University of Milano-Bicocca, Italy General questions: gianluca.dellavedova@unimib.it Questions about the course agenda: henrik.lantz@nbis.se National Research Council of ItalyINRANBIS - National Bioinformatics Infrastructure SwedenELIXIR EXCELERATE life scientistsResearchersPhD students 24 workshops_and_courses registration_of_interest Genomics AssemblyTrainingeLearningEeLP
  • ELIXIR-SIB Data Carpentry with R - Genomics curriculum

    1 - 2 July 2019

    Zurich, Switzerland

    Elixir node event
    ELIXIR-SIB Data Carpentry with R - Genomics curriculum https://tess.elixir-europe.org/events/elixir-sib-data-carpentry-with-r ELIXIR-EXCELERATE is funded by the European Commission within the Research Infrastructures programme of Horizon 2020, grant agreement number 676559 Overview This workshop is hosted by the SIB Swiss Institute of Bioinformatics and the 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced Statistics: Statistical Modeling

    19 - 22 August 2019

    Lausanne, Switzerland

    Elixir node event
    Advanced Statistics: Statistical Modeling https://tess.elixir-europe.org/events/advanced-statistics-statistical-modeling-5ff40dcd-dad2-46c2-a6d6-4a7c8b8d65a6 Overview While the statistical models and tools presented in an introductory statistics course (such as linear regression) can be used to answer a wide range of questions in life sciences, many types of data can not be analyzed using these tools. 2019-08-19 09:00:00 UTC 2019-08-22 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Clinical bioinformatics for microbial genomics and metagenomics - ESCMID, CHUV, SIB

    9 - 12 September 2019

    Lausanne, Switzerland

    Elixir node event
    Clinical bioinformatics for microbial genomics and metagenomics - ESCMID, CHUV, SIB https://tess.elixir-europe.org/events/clinical-bioinformatics-for-microbial-genomics-and-metagenomics-escmid-chuv-sib More information soon 2019-09-09 09:00:00 UTC 2019-09-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • RNA-seq: From quality control to pathway analysis

    23 - 24 September 2019

    Bern, Switzerland

    Elixir node event
    RNA-seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/rna-seq-from-quality-control-to-pathway-analysis-8a09dd6b-98c7-41cd-8be2-0efc7118f049 Overview This course will present all the bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-09-23 09:00:00 UTC 2019-09-24 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    25 September 2019

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-4430cc52-cd66-4a18-89c1-dc7e7fbe1bc1 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2019-09-25 09:00:00 UTC 2019-09-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with R in Life Sciences

    8 - 9 October 2019

    Lausanne, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-31722d33-fefc-4aaa-a004-cd69bbab054e Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2019-10-08 09:00:00 UTC 2019-10-09 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Joint SIB / SciLifeLab Autumn School Single Cell

    13 - 18 October 2019

    Leysin, Switzerland

    Elixir node event
    Joint SIB / SciLifeLab Autumn School Single Cell https://tess.elixir-europe.org/events/joint-sib-scilifelab-autumn-school-single-cell More information soon 2019-10-13 09:00:00 UTC 2019-10-18 00:00:00 UTC SIB, Leysin, Switzerland SIB Leysin Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to RNA-Seq

    21 - 22 October 2019

    Basel, Switzerland

    Elixir node event
    Introduction to RNA-Seq https://tess.elixir-europe.org/events/introduction-to-rna-seq-9b1ad1ee-b319-4f6e-bdeb-6b6a297145b2 Overview This two-day course will present the theory and bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-10-21 09:00:00 UTC 2019-10-22 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Best practices in programming 2019

    5 - 6 November 2019

    Basel, Switzerland

    Elixir node event
    Best practices in programming 2019 https://tess.elixir-europe.org/events/best-practices-in-programming-2019 This workshop is organised by the SIB PhD Training Network. Priority is given to its members, but is open to everyone. 2019-11-05 09:00:00 UTC 2019-11-06 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Python for Life Scientists

    18 - 20 November 2019

    tbd, Switzerland

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-4b472965-66f4-419e-a282-bc20f5664411 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2019-11-18 09:00:00 UTC 2019-11-20 00:00:00 UTC SIB, tbd, Switzerland SIB tbd Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
Note, this map only displays events that have geolocation information in TeSS.
For the complete list of events in TeSS, click the grid tab.