6 events found
Organizer: VIB Bioinformatics Core

Basic statistics in R
7  21 January 2019
Leuven, Belgium
Basic statistics in R http://www.vib.be/en/training/researchtraining/courses/Pages/IntroductiontoR.aspx https://tess.elixireurope.org/events/basicstatisticsinr b'\n\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, ttests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This\r\n training is an introduction to the use of R and RStudio and stops at very basic \r\nanalyses (ttests and nonparametric equivalents). A full overview of statistical analyses in R including regression, \r\nANOVA will be given in the followup training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theory training. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry training, the single cell RNASeq and the bulk RNASeq training....\n\r\n\n' 20190107 09:30:00 UTC 20190121 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
Introduction to the analysis of NGS data
11 January 2019
Leuven, Belgium
Introduction to the analysis of NGS data http://www.vib.be/en/training/researchtraining/courses/Pages/IntroductiontotheanalysisofNGSdata.aspx https://tess.elixireurope.org/events/introductiontotheanalysisofngsdata b'\nThis training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:\r\n The Illumina platform\r\n NGS data formats and file handling\r\n Quality control of NGS data\r\n Assembly and mapping of NGS data\r\n Supporting IT: Galaxy and GenePattern platform\r\n\r\n\n This training is an introduction to \'Hands on introduction to ChIPSeq analysis\', Handson introduction to NGS variant analysis\', \'GATK training\', and \'RNASeq analysis for differential expression in GenePattern\'. If you want to follow one of these trainings but you have no experience with NGS data you should follow this introduction. \n\r\n\r\n\n' 20190111 09:30:00 UTC 20190111 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
Basic statistics in R, Ghent
15  29 January 2019
Ghent, Belgium
Basic statistics in R, Ghent http://www.vib.be/en/training/researchtraining/courses/Pages/BasicstatisticsinR,Ghent.aspx https://tess.elixireurope.org/events/basicstatisticsinrghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, ttests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (ttests and nonparametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the followup training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNASeq and the bulk RNASeq training....\n\r\n\n' 20190115 09:30:00 UTC 20190129 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Ghent, Belgium BioAccelerator Ghent Belgium 9052 [] [] [] [] [] [] 
RNASeq analysis for differential expression
11  18 February 2019
Leuven, Belgium
RNASeq analysis for differential expression http://www.vib.be/en/training/researchtraining/courses/Pages/RNASeqanalysisfordifferentialexpression.aspx https://tess.elixireurope.org/events/rnaseqanalysisfordifferentialexpressioningenepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R  RStudio  Bioconductor  various packages \n\r\n\r\n\n \r\nFamiliarity with \n \nRNAseq assembly\r\nRNAseq analysis for isoform detection\r\nRNAseq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core\n\r\n\n' 20190211 09:30:00 UTC 20190218 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] [] 
Analyzing flow cytometry data in FlowJo
25 February 2019
Ghent (SintDenijsWestrem), Belgium
Analyzing flow cytometry data in FlowJo http://www.vib.be/en/training/researchtraining/courses/Pages/AnalyzingflowcytometrydatainFlowJo.aspx https://tess.elixireurope.org/events/analyzingflowcytometrydatainflowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multiplatform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 20190225 09:30:00 UTC 20190225 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (SintDenijsWestrem), Belgium Holiday Inn Gent Expo Ghent (SintDenijsWestrem) Belgium 9051 [] [] [] [] [] [] 
Using MOFA for integration of omics data
3 May 2019
Leuven, Belgium
Using MOFA for integration of omics data http://www.vib.be/en/training/researchtraining/courses/Pages/UsingMOFAforintegrationofomicsdata.aspx https://tess.elixireurope.org/events/usingmofaforintegrationofomicsdata 20190503 09:30:00 UTC 20190503 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
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