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14 events found

Organizer: NanoCommons  or VIB Conferences  or VIB Bioinformatics Core 

  • Image processing for correlated and multimodal imaging techniques

    19 October 2020 - 9 March 2021

    Elixir node event
    Image processing for correlated and multimodal imaging techniques https://tess.elixir-europe.org/events/image-processing-for-correlated-and-multimodal-imaging-techniques The purpose of this event is to dedicate three days of intense training to an audience with little or basic expertise. The program will first cover a full day of online lectures (19 October 2020), followed by two days of hands-on training (8 & 9 March 2021, Ghent). 2020-10-19 09:00:00 UTC 2021-03-09 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Gentle hands-on introduction to Python programming

    16 - 30 November 2020

    Leuven, Belgium

    Elixir node event
    Gentle hands-on introduction to Python programming https://tess.elixir-europe.org/events/gentle-hands-on-introduction-to-python-programming-tbc-autumn Learning the basics of Python programming: different variables, reading files, writing files, conditional statements Being able to write a basic Python script from scratch 2020-11-16 09:00:00 UTC 2020-11-30 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Bulk RNASeq: from counts to differential expression

    24 November - 1 December 2020

    Elixir node event
    Bulk RNASeq: from counts to differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-from-counts-to-differential-expression-eea507f0-2ad6-4e12-83ca-71f9f9101a4a The course will show: R tools to generate count files like featureCounts, and summarizeOverlaps are demonstrated Count files from HTSeq-Count, FeatureCounts, Salmon or Kallisto are used to identify differentially expressed genes After the live session participants can analyze their own count files. Issues can be handled during the Q&A session. 2020-11-24 09:00:00 UTC 2020-12-01 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Research Software Developers Day

    3 December 2020

    Elixir node event
    Research Software Developers Day https://tess.elixir-europe.org/events/research-software-engineers-conference The aim of this conference is to foster a community of research software developers and to collectively improve the standard of software used for scientific research. For this, our first edition, we focus on three main themes: reproducibility, software quality and infrastructure. The deadline for submissions of talks and workshop proposals has passed, however if you have something to say, whether broadly related to the topics mentioned above or not, we kindly request you to prepare for a lightning talk.  If you're interested in one of the workshops we kindly ask you to register via this link. Each workshop is limited to 20 participants and registrations will work on a first come, first served basis. You will receive more practical information regarding the workshops before the event.  The schedule is accessible at www.be-rse.org/.  2020-12-03 09:00:00 UTC 2020-12-03 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • DDA and DIA proteomic analysis in Galaxy

    3 - 4 December 2020

    Ghent, Belgium

    Elixir node event
    DDA and DIA proteomic analysis in Galaxy https://tess.elixir-europe.org/events/label-free-proteomics-data-analysis-in-galaxy At the beginning of the course we will introduce you to the Galaxy platform and teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.  Then, we will dive into proteomic analyses which are split up into two parts. First, we will use MaxQuant to analyze classical proteomic shotgun (label-free data dependent acquisition = DDA) data. MaxQuant is a standalone tool that enables peptide and protein identification as well as quantification.  In the second part we will perform a complete analysis workflow for data independent acquisition (DIA) data using a variety of open-source tools (including diapysef, OpenSwath, Pyprophet, MSstats). This includes generating a peptide library, refining the library and utilizing the library to identify and quantify peptides in DIA data.  2020-12-03 09:00:00 UTC 2020-12-04 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Translational Immunology

    8 - 9 December 2020

    Gent, Belgium

    Translational Immunology https://tess.elixir-europe.org/events/translational-immunology-fe17b83a-fab1-413f-94c3-9c6a1ecac893 Translational Immunology 8-9 DECEMBER 2020, GHENT, BELGIUM Due to the Coronavirus, Translational Immunology and the satellite BIS meeting were postponed from 26-27 March 2020 to the end of the year. We are happy to confirm the new date: 8-9 December 2020. The aim of this conference is to bridge the translational gap in immunopathology, bringing together clinicians, research scientists and industry partners to discuss prominent advances from the bench to the clinic. The different sessions will have a particular focus on precision medicine in general, starting from disease-oriented cases and lessons learned. Innovative and alternative therapeutic strategies in immune-mediated disorders will be presented, besides the regulatory challenges that companies and researchers are dealing with. Deadlines: - Abstract submission: 5 October 2020 - Early Bird deadline: 27 October 2020 - Late Registration deadline: 24 November 2020 Speakers: Rosa Bacchetta Stanford Medicine, US Dirk Elewaut VIB-UGent Center for Inflammation Research, BE Alain Fischer Assistance publique – Hôpitaux de Paris, FR Martin Guilliams VIB-UGent Center for Inflammation Research, BE Pleun Hombrink Sanquin, NL Bengt Hoepken Clinical Program Director, UCB Pharma, DE Isabelle Huys KU Leuven, BE Christophe Lahorte National Innovation Office & Scientific-Technical Advice Unit - (Famhp), BE Bart Lambrecht VIB-UGent Center for Inflammation Research, BE Antonio Lanzavecchia Institute for Research in Biomedicine, CH Sophie Lucas de Duve Institute, UCLouvain, BE Bénédicte Machiels FARAH Center, ULiège, BE Melanie Matheu CEO, Founder at Prellis Biologics, Inc., US Massimiliano Mazzone VIB-KU Leuven Center for Cancer Biology, BE Kathy McCoy University of Calgary, CA Eoin McKinney University of Cambridge, UK Fiona Powrie Kennedy Institute of Rheumatology, University of Oxford, UK Federica Sallusto Institute for Research in Biomedicine, CH Georg Schett Friedrich-Alexander University Erlangen-Nürnberg, DE Marvin van Luijn Erasmus MC, University Medical Center Rotterdam MS Center ErasMS, NL Location: De Bijloke, Jozef Kluyskensstraat 2, 9000 Gent Hashtag: #TransImmu20 2020-12-08 09:00:00 UTC 2020-12-09 17:00:00 UTC VIB Conferences Music Center De Bijloke, 2, Jozef Kluyskensstraat, Gent, Belgium Music Center De Bijloke, 2, Jozef Kluyskensstraat Gent Oost-Vlaanderen Belgium 9000 Immunoprecipitation experiment Immunology Immunoproteins, genes and antigens [] [] PhDPhD studentsAcademicsindustry 600 meetings_and_conferences [] ImmunologyImmunogenicityImmunogenomicsMetabolism of Immune Cellsantibodiestherapeutic antibodies
  • Introduction to Git & GitHub

    10 December 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-tbc-autumn Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up & configurations Working locally: Create a repository, clone, edit, staging commits, commit & push Working with your history & logs Working in a project: Forking, branching & pull requests How to version control your code in Rstudio with GitHub 2020-12-10 09:00:00 UTC 2020-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Liquid-Liquid Phase Separation

    14 - 15 December 2020

    Elixir node event
    Liquid-Liquid Phase Separation https://tess.elixir-europe.org/events/liquid-liquid-phase-separation-09e3b786-957d-4d94-9513-3bcfeb0269b7 The aim of this training day is – after a brief introduction – to provide guidelines for accurate experimental characterization of LLPS processes in vitro and in cells. We will end the day with a discussion on the implications of dysregulation of liquid-liquid phase separation for human disease. We have invited top-notch speakers on this topic to inform you on the latest developments.   2020-12-14 09:00:00 UTC 2020-12-15 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Basic statistics in R, online

    14 December 2020 - 25 January 2021

    Elixir node event
    Basic statistics in R, online https://tess.elixir-europe.org/events/basic-statistics-in-r-online-winter-session This training gives an introduction to the use of the free statistical software language R. This introduction is aimed at beginners.  The training covers data handling, graphics, and basic statistical techniques (t-tests, one-way ANOVA and non-parametric equivalents). A full overview of statistical analyses in R including regression, two-way ANOVA... will be given in follow-up trainings. By following this training you will: get an idea of what R and Rstudio is use R to handle data: creating, reading, reformatting and writing data use R to create graphics use basic statistical techniques in R : t-tests, wilcoxon tests, one-way ANOVA, Kruskal Wallis tests, chi square tests, correlations, survival analysis... write and use R scripts 2020-12-14 09:00:00 UTC 2021-01-25 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Deep learning in biology

    17 - 18 December 2020

    Elixir node event
    Deep learning in biology https://tess.elixir-europe.org/events/deep-learning-in-biology-autumn-session Large amounts of data and compute resources have enabled the development of high-performance machine learning models. This is particularly due to deep learning techniques. By looking at many data samples, these models can find structure in the data that is useful for predictive and explorative analysis: e.g. classification, clustering, data generation, dimensionality reduction, etc. The most popular applications within biotechnology are concerned with image segmentation, diagnostics, sequence analysis, etc. However, deep learning models are far from straightforward to implement correctly due to the many different hyperparameter settings, optimization procedures, architecture choices, etc. In this course, we will make use of Jupyter Notebook and Keras, which are both based on Python, to apply deep learning techniques on both bio informatics and bio image informatics data. We aim to work towards applications that participants would like to study. 2020-12-17 09:00:00 UTC 2020-12-18 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Introduction to Protein Structure Analysis, winter session

    31 December 2020 - 19 March 2021

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, winter session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-winter-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-12-31 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to the analysis of NGS data, online

    8 - 22 January 2021

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, online https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-online This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2021-01-08 09:00:00 UTC 2021-01-22 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Factorial design and analysis

    15 - 22 March 2021

    Elixir node event
    Factorial design and analysis https://tess.elixir-europe.org/events/factorial-design-and-analysis After attending this course, you will be able to reason about you experiment and come up with a design and analysis that fits your situations best, rather than to settle for a suboptimal textbook solution. 2021-03-15 09:00:00 UTC 2021-03-22 00:00:00 UTC VIB Bioinformatics Core [] [] [] [] [] []
  • Plant Science for Climate Emergency

    7 - 8 June 2021

    Gent, Belgium

    Elixir node event
    Plant Science for Climate Emergency https://tess.elixir-europe.org/events/plant-science-for-climate-emergency Climate change is one of the most serious threats humanity has ever faced. Developing crops that are more resilient to rapidly changing and harsher environments will be crucial for tomorrow’s food production. Green biotechnology offers solutions to maintain high food productivity while preserving the earth’s valuable ecosystems. In addition, plants may also play an important role in mitigating the rising levels of greenhouse gases. This VIB conference ‘Plant Science for Climate Emergency’ aims at reviewing current research on adapting plants to climate change as well as on using plants for mitigating the accumulation of greenhouse gasses. Twenty leaders in plant biotechnology will present the latest developments in sessions focused on drought tolerance, tolerance to high temperatures, salt and flooding tolerance, the effects of climate change on defense systems against insects and pathogens, carbon capturing plants, crop engineering and improvement, nitrogen use efficiency, and much more. Besides an inspiring scientific program, conference participants will have ample networking opportunities during the poster sessions, the reception, and the conference dinner. Deadlines: • Grant submission deadline: 15/03/2021 • Abstract submission deadline: 29/03/2021 • Early Bird deadline: 26/04/2021 • Late registration deadline: 24/05/2021 Speakers: • Tom Beeckman - VIB-UGent Center for Plant Systems Biology, BE • Wout Boerjan - VIB-UGent Center for Plant Systems Biology, BE • Hidde Boersma - freelance science journalist, essayist and documentary film maker, NL • Wolfgang Busch - Salk Institute for Biological Studies, US • Jorge Casal - Leloir Institute Foundation, AR • Ana Caño Delgado - Centre For Research In Agricultural Genomics, ES • Laura Dixon - University of Leeds, UK • Tobias Erb - Max Planck Institute for Terrestrial Microbiology, DE • Matthew Gilliham - The University of Adelaide, AU • Cara Haney - The University of British Columbia, CA • Sheng-Yang He - Michigan State University, USA • Gabriel Krouk - French National Centre for Scientific Research, FR • Mark Lynas - British author, journalist & environmental activist with a focus on climate change • Wenbo Ma - University of California Riverside, USA • Donald Richard Ort - University of Illinois, USA • Pierdomenico Perata - Sant'Anna School of Advanced Studies Pisa, IT • Rashmi Sasidharan - Utrecht University, NL • Motokai Seki - RIKEN Center for Sustainable Resource Science, JP • Mechthild Tegeder - Washington State University, USA • Christa Testerink - Wageningen University, NL Information for poster submissions: The format for your poster should be: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation. The best three abstracts were given a short talk slot in the plenary program. Travel grants: We offer 5 travel grants to international attendees, which will reimburse travel costs up to 400 Euros. Are you interested in attending PlantResearch21 and want to have a chance on a travel grant? Submit your motivation below by clicking on the 'Apply for a grant' button before 15 March 2021. The organizing committee will notify you of your travel grant acceptance by the end of March. No registration is needed before submitting a travel grant proposal. When you’re awarded with a travel grant you will receive a practical email containing the next steps. Note that being awarded a travel grant does not mean being registered for the conference. Scroll down to apply for your grant. 2021-06-07 09:00:00 UTC 2021-06-08 17:00:00 UTC VIB Conferences Music Center De Bijloke, 2, Jozef Kluyskensstraat, Gent, Belgium Music Center De Bijloke, 2, Jozef Kluyskensstraat Gent Oost-Vlaanderen Belgium 9000 [] conferences@vib.be [] PhD StudentsAcademicsIndustry [] first_come_first_served []

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