"Ready for BioData Management?" Data Stewardship program for the life sciences
21 February - 31 October 2022
Oeiras, Portugal"Ready for BioData Management?" Data Stewardship program for the life sciences https://biodata.pt/node/387 https://tess.elixir-europe.org/events/ready-for-biodata-management-data-stewardship-program-for-the-life-sciences BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations. It will unfold from February to October 2022, allowing trainees get some practice and consolidate the acquired knowledge. It will comprise an introductory module covering the basic concepts of Data Stewardship followed by two assignments and end with a hands-on course for knowledge consolidation. 2022-02-21 09:00:00 UTC 2022-10-31 17:00:00 UTC BioData.pt | ELIXIR Portugal Online and F2F (See details in training documentation), Oeiras, Portugal Online and F2F (See details in training documentation) Oeiras Portugal FAIR data Data submission, annotation, and curation Bioinformatics Data management Biodata.pt - Elixir's portuguese node of the european projec email@example.com ELIXIR Life Science Researchers 24 workshops_and_courses registration_of_interest data managementData management plandata stewardshipdata annotationlife sciencestraining
Analysis of single cell RNA-seq data (ONLINE LIVE TRAINING)
17 June - 1 July 2022
Cambridge, United KingdomAnalysis of single cell RNA-seq data (ONLINE LIVE TRAINING) http://training.csx.cam.ac.uk/bioinformatics/event/4306409 https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-online-live-training-b8ef1f2a-776d-42f4-a490-f018700ae7ba Recent technological advances have made it possible to obtain genome-wide transcriptome data from single cells using high-throughput sequencing (scRNA-seq). Even though scRNA-seq makes it possible to address problems that are intractable with bulk RNA-seq data, analysing scRNA-seq is also more challenging. In this course we will be surveying the existing problems as well as the available computational and statistical frameworks available for the analysis of scRNA-seq. Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4306409&&course-title=Analysis%20of%20single%20cell%20RNA-seq%20data).'' 2022-06-17 08:30:00 UTC 2022-07-01 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Transcriptomics Functional genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training  Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses  HDRUK
EMBL-EBI: Network Analysis with Cytoscape (Online)
20 - 21 June 2022
Cambridge, United KingdomEMBL-EBI: Network Analysis with Cytoscape (Online) http://training.csx.cam.ac.uk/bioinformatics/event/4306738 https://tess.elixir-europe.org/events/embl-ebi-network-analysis-with-cytoscape-online-b82c9960-d4ec-4b28-bd6c-c6e413c587cf This course provides an introduction to the basic theory and concepts of network analysis. Attendees will learn how to construct protein-protein interaction networks and subsequently use these to overlay large-scale data such as that obtained through RNA-Seq or mass-spec proteomics. The course will focus on giving attendees hands-on experience in the use of one of the most commonly used open source Network Visualisation Platforms, [Cytoscape](https://cytoscape.org/what_is_cytoscape.html). The course will also access and analyse the data through Cytoscape apps, including IntAct app. Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4306738&course-title=EMBL-EBI:%20Network%20Analysis%20with%20Cytoscape).'' 2022-06-20 08:30:00 UTC 2022-06-21 12:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training  This workshop is aimed at researchers interested in proteinsnetwork analysisprotein-protein interactions and related areasBiologists and bioinformaticiansGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses  HDRUK
Building Workflows in Digital Health
29 June 2022
Manchester, United KingdomBuilding Workflows in Digital Health https://n8cir.org.uk/events/building-workflows-digital-health/ https://tess.elixir-europe.org/events/building-workflows-in-digital-health Orchestration Workflows are widely used in computational data analysis, enabling innovation and decision-making. Often the analysis components are numerous, and written by third parties, without an eye on interoperability. In addition, many competing workflow systems exist, potentially limiting portability of workflows written for any one specific workflow system. This hinders the transfer of workflows between different systems and projects, limiting their re-usability. The Common Workflow Language (CWL) project (https://www.commonwl.org/) was established in order to produce free and open standards for describing command-line tool-based workflows. The CWL language is declarative and provides a focused set of common abstractions enabling the expression of computational workflows constructed from diverse software tools. Explicit declaration of requirements for runtime environments and software containers enables portability and reuse. Workflows written according to the CWL standards are a reusable description of that analysis, runnable on a diverse set of computing environments. 2022-06-29 10:00:00 UTC 2022-06-29 17:00:00 UTC N8CIR University Place, University of Manchester, Manchester, United Kingdom University Place, University of Manchester Manchester United Kingdom M13 9PL Bioinformatics Workflows Data architecture, analysis and design University of Manchester   workshops_and_courses registration_of_interest workflowsdata-analysiscomputational methods
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