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  • Joint SIB / SciLifeLab Autumn School Single Cell Analysis

    13 - 18 October 2019

    Leysin, Switzerland, Switzerland

    Elixir node event
    Joint SIB / SciLifeLab Autumn School Single Cell Analysis https://tess.elixir-europe.org/events/joint-sib-scilifelab-autumn-school-single-cell Application is now closed. This course is organised by NBIS/SciLifeLab and the SIB PhD Training Network. Priority is given to their members, but is open to everyone. 2019-10-13 09:00:00 UTC 2019-10-18 00:00:00 UTC SIB, Leysin, Switzerland, Switzerland SIB Leysin, Switzerland Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] #trainingtraining
  • From reads to disease variants

    21 - 25 October 2019

    Granada, Spain

    Elixir node event
    From reads to disease variants https://tess.elixir-europe.org/events/from-reads-to-disease-variants Massive sequencing is becoming mainstream in many fields of biomedicine, including the clinical practice. However, the management of sequencing raw data to transform them into valuable biological information on variants and its further interpretation is still a complex task that requires of intensive computing and trained personnel. This course covers all the steps from the raw sequencing data, produced by the sequencers, to the obtention of lists of variants using the popular GATK software. The course is followed by a tutorial on the IVA, a powerful and intuitive web interface for the interactive prioritization and detection of disease variants. GATK workshops are designed to provide a comprehensive onboarding experience to new users, as well as access to more advanced understanding for users who are already familiar with the toolkit. 2019-10-21 09:15:00 UTC 2019-10-25 13:30:00 UTC Fundación Progreso y Salud (FPS), Broad Institute and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) Granada, Spain Granada Spain Fundación Progreso y Salud (FPS) [] mixed audienceGATK newbiesvariant discovery newbiesGATK expertsGATK users workshops_and_courses [] Variant callingVariant discoveryGATKdisease variantpriorizationgenomics
  • NBIS Course: Single cell RNA sequencing analysis course

    27 - 31 January 2020

    Solna, Sweden

    Elixir node event
    NBIS Course: Single cell RNA sequencing analysis course https://tess.elixir-europe.org/events/nbis-course-single-cell-rna-sequencing-analysis-course #training #url: https://nbisweden.github.io/workshop-scRNAseq/ Single cell RNA sequencing analysis course Links:  Course: https://nbisweden.github.io/workshop-scRNAseq/ Registration form: https://forms.gle/6VFVTFep6iYk7wLr9 The first 3 days of the course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include: An overview of the current scRNAseq technologies Basic overview of pipelines for processing raw reads into expression values Quality control of scRNAseq data Dimensionality reduction and clustering techniques Data normalization Differential gene expression for scRNAseq data Trajectory analysis Comparison of different analysis pipelines such as Seurat, Scran and Scanpy On the fourth day we offer a “Bring your own data” day where you can analyse your data using the tools that you have discovered during the course, with TAs present to help you run the analyses and discuss your results. If you do not have your own data you can still select a public dataset of interest and analyse during that day. Application deadline -- December 16 Acceptance notification — December 20 contact: education@nbis.se 2020-01-27 09:00:00 UTC 2020-01-31 00:00:00 UTC Solna, Sweden Solna Sweden [] Åsa Björklund - asa.bjorklund@scilifelab.se [] [] [] [] #trainingtraining
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