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  • Open Targets Workshop

    28 March 2019

    EMBL-EBI

    Open Targets Workshop https://tess.elixir-europe.org/events/open-targets-workshop-55d54e1b-0a19-4e14-9719-6df0ad7054b9 In this workshop, we introduce Open Targets and its underlying projects for data integration for access and visualisation of biological data in drug target identification and discovery. 2019-03-28 09:00:00 UTC 2019-03-28 00:00:00 UTC EMBL-EBI, EMBL-EBI EMBL-EBI EMBL-EBI [] [] [] workshops_and_courses [] Open Targets
  • Software carpentry workshop

    1 - 3 April 2019

    Bergen, Norway

    Software carpentry workshop https://tess.elixir-europe.org/events/software-carpentry-workshop-3acee97f-5c7d-48a0-b87d-a6523f239ce9 Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. The WS is over three days. The first day will concentrate on Unix shell and Git, and day two and day three on R for Reproducible Scientific Analysis. 2019-04-01 09:00:00 UTC 2019-04-03 17:00:00 UTC Bergen, Bergen, Norway Bergen Bergen Hordaland Norway 5008 University of BergenElixir Norway David Grellscheid <d.grellscheid@gmail.com> [] Graduate StudentsResearchers workshops_and_courses first_come_first_served Software Carpentry R-programmingUNIXShellReproducible Science
  • Open Targets webinar - Bristol-Myers Squibb

    12 April 2019

    Open Targets webinar - Bristol-Myers Squibb https://tess.elixir-europe.org/events/open-targets-webinar-c-comend-training-in-translational-research In this webinar, we introduce Open Targets and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for systematic target identification and prioritisation in drug discovery. 2019-04-12 09:00:00 UTC 2019-04-12 00:00:00 UTC [] [] [] workshops_and_courses [] Open Targets
  • Semmelweis University Data Carpentry Workshop

    17 - 18 April 2019

    Budapest, Hungary

    Semmelweis University Data Carpentry Workshop https://tess.elixir-europe.org/events/semmelweis-university-data-carpentry-workshop Data Carpentry workshop on data organization, cleaning, analysis and plotting using Excel, OpenRefine, R and RStudio. 2019-04-17 09:00:00 UTC 2019-04-18 17:00:00 UTC Endre Sebestyén Histology Seminar Room (ground floor), Semmelweis University, 1st Department of Pathology and Experimental Cancer Research, H-1085 Budapest, Üllői út 26., Budapest, Hungary Histology Seminar Room (ground floor), Semmelweis University, 1st Department of Pathology and Experimental Cancer Research, H-1085 Budapest, Üllői út 26. Budapest Hungary 1085 Data visualisation Data quality management Semmelweis University, 1st Department of Pathology and Experimental Cancer Research Endre Sebestyén - sebestyen.endre@med.semmelweis-univ.hu Semmelweis UniversityOmixon Biocomputing Ltd Graduate StudentspostdocsResearchers 25 workshops_and_courses first_come_first_served R-programmingdata visualizationData analysis
  • Data processing with R tidyverse

    14 - 17 May 2019

    Esch-sur-Alzette, Luxembourg

    Data processing with R tidyverse https://tess.elixir-europe.org/events/data-processing-with-r-tidyverse-7eaa0e9d-7b8d-4dc3-9fb0-5d766e8bfe8f R is a powerful language for data science in many disciplines of research with a steep learning curve. The tidyverse group of packages provide a dialect that greatly simplifies data importing, cleaning, processing, and visualization as well as providing reproducible workflows, replacing many intricacies of R with clear and easy to learn syntax. 2019-05-14 09:00:00 UTC 2019-05-17 17:00:00 UTC MSA 4.510, Esch-sur-Alzette, Luxembourg MSA 4.510 Esch-sur-Alzette Luxembourg University of Luxembourg roland.krause@elixir-luxembourg.org [] Researchers 25 workshops_and_courses registration_of_interest Data analysis R-programming
  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-software-carpentry-ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data &amp; Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](https://elixir.mf.uni-lj.si/course/view.php?id=46)**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • RepeatExplorer Workshop

    21 - 23 May 2019

    České Budějovice, Czechia

    Elixir node event
    RepeatExplorer Workshop https://tess.elixir-europe.org/events/repeatexplorer-workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2019-05-21 09:00:00 UTC 2019-05-23 18:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia Institute of Plant Molecular Biology, České Budějovice, Czech Republic http://repeatexplorer.org/?page_id=14 [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served next generation sequencingNext generation sequencing data analysisGalaxyRepetitive DNA Analysis
  • Open Targets Genetics at ESHG

    15 June 2019

    Sweden

    Open Targets Genetics at ESHG https://tess.elixir-europe.org/events/workshop-at-eshg In this workshop, we will introduce Open Targets Genetics Portal as part of the Open Targets ecosystem, highlighting variant-centric statistical evidence for prioritizing candidate causal variants at trait-associated loci, and identifying potential drug targets. We will present POSTGAP, a pipeline which merges genetic associations curated from literature with functional genomics, epigenetic and expression data (e.g., eQTL, promoter capture Hi-C, DNase hypersensitivity sites, regulatory elements) to resolve association signals at a locus and link each variant to its target gene(s) using a single evidence score. The portal also incorporates pre-computed fine-mapping at trait-associated loci across hundreds of UK Biobank phenotypes as well as cross-trait colocalization, furthering drug repurposing opportunities. This workshop will enable you to effectively use Open Targets Genetics to gain biological insight, prioritize genes, and inform target decision-making. Intended Audience: Attendees interested in the translational application of genetics and genomics with an emphasis on the identification of target genes of trait-associated loci, drug target identification, prioritisation and repurposing. Participants should bring their laptops for exploration of the Open Targets Genetics Portal in situ. 2019-06-15 09:00:00 UTC 2019-06-15 00:00:00 UTC Gothenburg, Sweden Gothenburg Sweden [] [] [] workshops_and_courses [] Open Targets
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