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  • RepeatExplorer Workshop

    21 - 23 May 2019

    České Budějovice, Czechia

    Elixir node event
    RepeatExplorer Workshop https://tess.elixir-europe.org/events/repeatexplorer-workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2019-05-21 09:00:00 UTC 2019-05-23 18:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia Institute of Plant Molecular Biology, České Budějovice, Czech Republic http://repeatexplorer.org/?page_id=14 [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served next generation sequencingNext generation sequencing data analysisGalaxyRepetitive DNA Analysis
  • Data visualisation with Python

    22 May 2019

    Melbourne, Australia

    Data visualisation with Python https://tess.elixir-europe.org/events/data-visualisation-with-python 2019-05-22 09:00:00 UTC 2019-05-22 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxypython
  • Best Practices in Bioinformatics Software Development

    5 June 2019

    Melbourne, Australia

    Best Practices in Bioinformatics Software Development https://tess.elixir-europe.org/events/best-practices-in-bioinformatics-software-development 2019-06-05 09:00:00 UTC 2019-06-05 17:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxy
  • Open Targets Genetics at ESHG

    15 June 2019

    Sweden

    Open Targets Genetics at ESHG https://tess.elixir-europe.org/events/workshop-at-eshg In this workshop, we will introduce Open Targets Genetics Portal as part of the Open Targets ecosystem, highlighting variant-centric statistical evidence for prioritizing candidate causal variants at trait-associated loci, and identifying potential drug targets. We will present POSTGAP, a pipeline which merges genetic associations curated from literature with functional genomics, epigenetic and expression data (e.g., eQTL, promoter capture Hi-C, DNase hypersensitivity sites, regulatory elements) to resolve association signals at a locus and link each variant to its target gene(s) using a single evidence score. The portal also incorporates pre-computed fine-mapping at trait-associated loci across hundreds of UK Biobank phenotypes as well as cross-trait colocalization, furthering drug repurposing opportunities. This workshop will enable you to effectively use Open Targets Genetics to gain biological insight, prioritize genes, and inform target decision-making. Intended Audience: Attendees interested in the translational application of genetics and genomics with an emphasis on the identification of target genes of trait-associated loci, drug target identification, prioritisation and repurposing. Participants should bring their laptops for exploration of the Open Targets Genetics Portal in situ. 2019-06-15 09:00:00 UTC 2019-06-15 00:00:00 UTC Gothenburg, Sweden Gothenburg Sweden [] [] [] workshops_and_courses [] Open Targets
  • Open Targets Genetics at ESHG

    15 June 2019

    Sweden

    Open Targets Genetics at ESHG https://tess.elixir-europe.org/events/open-targets-genetics-at-eshg In this workshop, we will introduce Open Targets Genetics Portal as part of the Open Targets ecosystem, highlighting variant-centric statistical evidence for prioritizing candidate causal variants at trait-associated loci, and identifying potential drug targets. We will present POSTGAP, a pipeline which merges genetic associations curated from literature with functional genomics, epigenetic and expression data (e.g., eQTL, promoter capture Hi-C, DNase hypersensitivity sites, regulatory elements) to resolve association signals at a locus and link each variant to its target gene(s) using a single evidence score. The portal also incorporates pre-computed fine-mapping at trait-associated loci across hundreds of UK Biobank phenotypes as well as cross-trait colocalization, furthering drug repurposing opportunities. This workshop will enable you to effectively use Open Targets Genetics to gain biological insight, prioritize genes, and inform target decision-making. Intended Audience: Attendees interested in the translational application of genetics and genomics with an emphasis on the identification of target genes of trait-associated loci, drug target identification, prioritisation and repurposing. Participants should bring their laptops for exploration of the Open Targets Genetics Portal in situ. 2019-06-15 09:00:00 UTC 2019-06-15 00:00:00 UTC Gothenburg, Sweden Gothenburg Sweden [] [] [] workshops_and_courses [] Open Targets
  • Open Targets workshop - University of Oxford

    4 July 2019

    United Kingdom

    Open Targets workshop - University of Oxford https://tess.elixir-europe.org/events/open-targets-webinar-c-comend-training-in-translational-research In this workshop, we introduce Open Targets and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for systematic target identification and prioritisation in drug discovery. 2019-07-04 09:00:00 UTC 2019-07-04 00:00:00 UTC Oxford, United Kingdom Oxford United Kingdom [] [] [] workshops_and_courses [] Open Targets
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    29 July 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-2ff9b072-1103-4692-843f-ea46c80b0b82 2019-07-29 09:00:00 UTC 2019-07-29 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    30 July 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-f678f24b-9a45-4be8-a024-c4d604e4375c 2019-07-30 09:00:00 UTC 2019-07-30 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    31 July 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-beef95ab-2c30-4e05-9c16-f9e3c7efd073 2019-07-31 09:00:00 UTC 2019-07-31 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    1 August 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-4180d7b9-2047-4c2c-9273-550fdd06284a 2019-08-01 09:00:00 UTC 2019-08-01 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    2 August 2019

    Brisbane, Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-04eee91c-0212-4e44-aeb0-7ea8b80c1370 2019-08-02 09:00:00 UTC 2019-08-02 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Genome assembly using the command line (2 days)

    20 - 21 August 2019

    Brisbane, Australia

    Genome assembly using the command line (2 days) https://tess.elixir-europe.org/events/genome-assembly-using-the-command-line-2-days 2019-08-20 09:00:00 UTC 2019-08-21 17:00:00 UTC QFAB Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    23 September 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-fe6e1892-806d-4078-979a-71e5b2ae842a 2019-09-23 09:00:00 UTC 2019-09-23 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    24 September 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-5e8d0966-8ee8-4d64-8663-c49d25525a60 2019-09-24 09:00:00 UTC 2019-09-24 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    25 September 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-ad768f51-e8ab-4c04-83a3-388fec5ae25b 2019-09-25 09:00:00 UTC 2019-09-25 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Variant detection using Galaxy (1 day)

    26 September 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-377372e4-b0dd-425d-8ae7-1ef5d902d26b 2019-09-26 09:00:00 UTC 2019-09-26 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    27 September 2019

    Brisbane, Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-aa7d8414-431f-4b57-8416-bb05ac1389da 2019-09-27 09:00:00 UTC 2019-09-27 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Assembly of long-read sequencing (2 days)

    12 - 13 November 2019

    Brisbane, Australia

    Assembly of long-read sequencing (2 days) https://tess.elixir-europe.org/events/assembly-of-long-read-sequencing-2-days-a1383ac8-7ceb-429e-9360-61be939cbcdb 2019-11-12 09:00:00 UTC 2019-11-13 17:00:00 UTC QFAB Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] [] [] bioinformatics RNA-SeqGalaxy
  • RNA-Seq using R (2 days - Knowledge of R required)

    3 - 4 December 2019

    Brisbane, Australia

    RNA-Seq using R (2 days - Knowledge of R required) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-advanced-393853d7-8b13-4f51-b774-afb159f5d818 2019-12-03 09:00:00 UTC 2019-12-04 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
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