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  • NBIS Course: Single cell RNA sequencing analysis course

    27 - 31 January 2020

    Solna, Sweden

    Elixir node event
    NBIS Course: Single cell RNA sequencing analysis course https://tess.elixir-europe.org/events/nbis-course-single-cell-rna-sequencing-analysis-course #training #url: https://nbisweden.github.io/workshop-scRNAseq/ Single cell RNA sequencing analysis course Links:  Course: https://nbisweden.github.io/workshop-scRNAseq/ Registration form: https://forms.gle/6VFVTFep6iYk7wLr9 The first 3 days of the course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include: An overview of the current scRNAseq technologies Basic overview of pipelines for processing raw reads into expression values Quality control of scRNAseq data Dimensionality reduction and clustering techniques Data normalization Differential gene expression for scRNAseq data Trajectory analysis Comparison of different analysis pipelines such as Seurat, Scran and Scanpy On the fourth day we offer a “Bring your own data” day where you can analyse your data using the tools that you have discovered during the course, with TAs present to help you run the analyses and discuss your results. If you do not have your own data you can still select a public dataset of interest and analyse during that day. Application deadline -- December 16 Acceptance notification — December 20 contact: education@nbis.se 2020-01-27 09:00:00 UTC 2020-01-31 00:00:00 UTC Solna, Sweden Solna Sweden [] Åsa Björklund - asa.bjorklund@scilifelab.se [] [] [] [] #trainingtraining
  • NGS Platforms: how data generation impacts bioinformatics analysis

    17 February 2020

    Saint Lucia, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis https://tess.elixir-europe.org/events/ngs-platforms-how-data-generation-impacts-bioinformatics-analysis-25167ec3-fcc0-4a46-846d-e79a373979be 2020-02-17 09:00:00 UTC 2020-02-17 17:00:00 UTC QCIF The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Queensland Australia 4072 University of Queensland Mark Crowe - mark.crowe@qcif.edu.au [] Postgraduate studentsPostdoctoral researchers [] [] Next Generation Sequencing technologiesGalaxyBioinformatics
  • ELIXIR Norway: Workshop in Data Management for Life Science projects

    21 February 2020

    Tromsø, Norway

    Elixir node event
    ELIXIR Norway: Workshop in Data Management for Life Science projects https://tess.elixir-europe.org/events/elixir-norway-workshop-in-data-management-for-life-science-projects The topic of the workshop is how to generate a data management plan for a research project that will meet the requirements of the funding organisations. The intended audience are researchers (PhD candidates, post-doctoral fellows, researchers, associate professors, professors) who are planning to submit a grant application for a research project. You will set up a data management plan for your project using the **ELIXIR Norway Data Steward Wizard (DSW) tool**. DSW is more flexible and provides more domain specific templates than the easyDMP offered by Uninett/Sigma2. **Course content:** -Requirements from the funding bodies and legal requirements -Licensing of data, biological material and software -Information on national and local storage infrastructures -Relevant deposition repositories (data archives) -Hands on training and assistance to generate a data management plan **Requirements:** -Bring your laptop -Optionally you can also bring your research project (if you have one) **Teachers:** -Korbinian Bösl -Erik Hjerde -Nils Peder Willassen 2020-02-21 09:00:00 UTC 2020-02-21 15:30:00 UTC ELIXIR Norway University of Tromsø, Tromsø, Norway University of Tromsø Tromsø Troms Norway 9019 Data quality management University of Tromsø ELIXIR Norway PhD candidatesPost-Doctoral FellowsResearchersAssociate ProfessorsProfessorsdata managers workshops_and_courses registration_of_interest data stewardship DSWdata managementlife sciencesData management planeLearningEeLP
  • RNA-Seq analysis using Galaxy

    6 April 2020

    Saint Lucia, Australia

    RNA-Seq analysis using Galaxy https://tess.elixir-europe.org/events/rna-seq-analysis-using-galaxy-27541783-c01f-4405-8508-b8f5bda790ae 2020-04-06 09:00:00 UTC 2020-04-06 17:00:00 UTC QCIF The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Queensland Australia 4072 University of Queensland Mark Crowe - mark.crowe@qcif.edu.au [] Postgraduate studentsPostdoctoral researchers [] [] RNA-SeqGalaxyBioinformaticsGene ExpressionDifferential Expression
  • Genome assembly using Galaxy

    14 July 2020

    Saint Lucia, Australia

    Genome assembly using Galaxy https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-bfd44b56-d4a3-4863-a62b-e7656374a9a9 2020-07-14 09:00:00 UTC 2020-07-14 17:00:00 UTC QCIF The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Queensland Australia 4072 University of Queensland Mark Crowe - mark.crowe@qcif.edu.au [] Postgraduate studentsPostdoctoral researchers [] [] Genome AssemblyDe novo genome assemblyGalaxyBioinformatics
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