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  • A Tidy Transcriptomics introduction to RNA-Seq analyses

    27 July 2020

    A Tidy Transcriptomics introduction to RNA-Seq analyses https://tess.elixir-europe.org/events/a-tidy-transcriptomics-introduction-to-rna-seq-analyses This workshop will present how to perform analysis of RNA sequencing data following the tidy data paradigm. The tidy data paradigm provides a standard way to organise data values within a dataset, where each variable is a column, each observation is a row, and data is manipulated using an easy-to-understand vocabulary. Most importantly, the data structure remains consistent across manipulation and analysis functions. This can be achieved for RNA sequencing data with the [tidybulk](github.com/stemangiola/tidybulk), [tidyHeatmap](github.com/stemangiola/tidyHeatmap) and tidyverse packages. The package [tidybulk](github.com/stemangiola/tidybulk) provides a tidy data structure and a modular framework for bulk transcriptional analyses. tidyHeatmap provides a tidy implementation of ComplexHeatmap. These packages are part of the tidytranscriptomics suite that introduces a tidy approach to RNA sequencing data. The topics presented in this workshop will be - Data exploration - Data dimensionality reduction and clustering - Differential gene expression analysis - Data visualisation ## Pre-requisites * Basic knowledge of RStudio * Familiarity with tidyverse syntax Recommended Background Reading [Introduction to R for Biologists](https://melbournebioinformatics.github.io/r-intro-biologists/intro_r_biologists.html) 2020-07-27 17:00:00 UTC 2020-07-27 17:55:00 UTC Bioc2020 RNA-Seq [] [] Beginners workshops_and_courses [] RNA-seqTranscriptomicsDifferential ExpressionGene Expression R-programmingBioconductortidyverse
  • Using the Ensembl Genome Browser (ONLINE TRAINING)

    1 September 2020

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser (ONLINE TRAINING) https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-467135ab-7028-4d4f-8a24-bbffa5548b3b PLEASE NOTE The Bioinformatics Team are presently teaching as many courses live online, with tutors available to help you work through the course material on a personal copy of the course environment. We aim to simulate the classroom experience as closely as possible, with opportunities for one-to-one discussion with tutors and a focus on interactivity throughout. The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3351117&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2020-09-01 08:30:00 UTC 2020-09-01 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK

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