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  • NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day)

    23 September 2019

    Brisbane, Australia

    NGS Platforms: how data generation impacts bioinformatics analysis? - Quality Control (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-fe6e1892-806d-4078-979a-71e5b2ae842a 2019-09-23 09:00:00 UTC 2019-09-23 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy
  • Genome assembly using Galaxy (1 day)

    24 September 2019

    Brisbane, Australia

    Genome assembly using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-5e8d0966-8ee8-4d64-8663-c49d25525a60 2019-09-24 09:00:00 UTC 2019-09-24 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • RNA Seq analysis using Galaxy (1 day)

    25 September 2019

    Brisbane, Australia

    RNA Seq analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-ad768f51-e8ab-4c04-83a3-388fec5ae25b 2019-09-25 09:00:00 UTC 2019-09-25 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide)

    25 - 26 September 2019

    Adelaide, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Adelaide) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow 2019-09-25 09:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000, Adelaide, Australia Room 4.50 Braggs Building North Terrace Campus, University of Adelaide Adelaide, SA 5000 Adelaide Adelaide City Council Australia Bioinformatics University of Adelaide [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre)

    25 - 26 September 2019

    Perth, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Pawsey Supercomputing Centre) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-3e39d24f-3f89-496f-8d54-479324a373b9 2019-09-25 10:00:00 UTC 2019-09-26 14:00:00 UTC EMBL-ABR Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151, Perth, Australia Seminar Room Australian Resources Research Centre (ARRC) 26 Dick Perry Avenue Kensington, WA 6151 Perth Australia Bioinformatics Australian Resources Research Centre [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Monash University) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-monash-university 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC, Melbourne, Australia L1.02, 44 Exhibition Walk Matheson Library Monash University Clayton, VIC Melbourne Australia Bioinformatics Monash University [] [] [] [] SnakemakeNextflowbioinformatics
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (Hudson Institute) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-c253f254-38a1-4de9-b3cf-8abf216453db 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168, Melbourne, Australia Boardroom 1, Level 3 Hudson Institute of Medical Research 27-31 Wright Street Clayton, VIC 3168 Melbourne Australia Bioinformatics [] [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU)

    25 - 26 September 2019

    Townsville, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (JCU) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-b20f419e-63fe-4ad1-a65c-4afe6f988d4c 2019-09-25 12:00:00 UTC 2019-09-26 17:00:00 UTC EMBL-ABR Room 002-107 James Cook University Townsville, QLD, Townsville, Australia Room 002-107 James Cook University Townsville, QLD Townsville Townsville City Australia Bioinformatics James Cook University [] [] [] [] bioinformaticsSnakemakeNextflow
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ)

    25 - 26 September 2019

    Saint Lucia, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (UQ) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-826ee571-b240-4f58-afb8-fd46491db6b1 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Room 505 Axon Building (#47) University of Queensland St Lucia, QLD, Saint Lucia, Australia Room 505 Axon Building (#47) University of Queensland St Lucia, QLD Saint Lucia Australia Bioinformatics University of Queensland [] [] [] [] bioinformaticsNextflowSnakemake
  • Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne)

    25 - 26 September 2019

    Melbourne, Australia

    Implementing Scalable Bioinformatic Workflows in Snakemake & Nextflow (University of Melbourne) https://tess.elixir-europe.org/events/implementing-scalable-bioinformatic-workflows-in-snakemake-nextflow-23941db7-c610-4aaf-8789-f55c938edb0d 2019-09-25 12:00:00 UTC 2019-09-26 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053, Melbourne, Australia Melbourne Bioinformatics 187 Grattan St University of Melbourne CARLTON, VIC 3053 Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsSnakemakeNextflow
  • Variant detection using Galaxy (1 day)

    26 September 2019

    Brisbane, Australia

    Variant detection using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-377372e4-b0dd-425d-8ae7-1ef5d902d26b 2019-09-26 09:00:00 UTC 2019-09-26 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Metagenomics analysis using Galaxy (1 day)

    27 September 2019

    Brisbane, Australia

    Metagenomics analysis using Galaxy (1 day) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-with-galaxy-aa7d8414-431f-4b57-8416-bb05ac1389da 2019-09-27 09:00:00 UTC 2019-09-27 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • 4th Disease Maps Community Meeting - DMCM2019

    2 - 4 October 2019

    Sevilla, Spain

    Elixir node event
    4th Disease Maps Community Meeting - DMCM2019 https://tess.elixir-europe.org/events/4th-disease-maps-community-meeting-dmcm2019 The [4th Disease Maps Community Meeting] (http://disease-maps.org/DMCM2019) is hosted by the [Clinical Bioinformatics Area] (http://www.clinbioinfosspa.es/), FPS, Hospital Virgen del Rocio. **Invited Talks** * _Schizophrenia Map: Data to knowledge to data_ **Jessica Dale Tenenbaum**, Duke University at Durham, North Carolina, USA * _Logic modeling to integrate disease maps and various omics data_ **Julio Saez-Rodriguez**, RWTH-Aachen University Hospital, Aachen, Germany * _Toward whole-cell computational models for precision medicine_ **Jonathan Karr**, Icahn School of Medicine at Mount Sinai, New York, USA * _Computational approaches to tackle chemoresistance in high-grade serous ovarian cancer_ **Sampsa Hautaniemi**, Faculty of Medicine, University of Helsinki, Finland **Afternoon discussion sessions** Afternoon breakout discussion sessions are planned following the example of the 2nd Disease Maps Community Meeting in Luxembourg. We invite proposals: a title and a brief description of the topic (1 page maximum). 4-6 topics will be selected, introduced 2nd October and discussed 3rd and 4th October with summaries presented at the end to all the participants. **Abstract subimission and registration** http://disease-maps.org/DMCM2019 2019-10-02 09:30:00 UTC 2019-10-04 13:30:00 UTC Disease Maps Project Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot, Sevilla, Spain Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot Sevilla Spain 41013 Systems medicine Translational medicine Bioinformatics Fundación Progreso y Salud (FPS)Hospital Virgen del Rocio disease-maps-coord@googlegroups.com [] [] meetings_and_conferences [] BioinformaticsClinical BioinformaticsDiseasesDisease mapsTranslational Bioinformaticssystems medicine
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
  • Genome Alliance in Australasia (GAIA)

    30 October 2019

    Webinar, Australia

    Genome Alliance in Australasia (GAIA) https://tess.elixir-europe.org/events/genome-alliance-in-australasia-gaia 2019-10-30 12:00:00 UTC 2019-10-30 13:00:00 UTC EMBL-ABR Webinar, Webinar, Australia Webinar Webinar Australia Bioinformatics [] [] [] [] [] bioinformatics
  • 4th European Conference on Translational Bioinformatics - ECTB2019

    11 - 12 November 2019

    Granada, Spain

    Elixir node event
    4th European Conference on Translational Bioinformatics - ECTB2019 https://tess.elixir-europe.org/events/4th-european-conference-on-translational-bioinformatics-ectb2019 We are pleased to present the 4th European Conference on Translational Bioinformatics: Biomedical Big Data Supporting Precision Medicine (#ECTB2019). The fourth ECTB edition follows the successful precedent of previous editions organized in 2016 at the University of Copenhagen, Denmark, in 2017 at the European Bioinformatics Institute, UK and in 2018 at the Barcelona Biomedical Research Park (PRBB). ECTB2019 will bring together researchers, clinicians, developers, and companies interested in exchanging experiences on the translation of research and innovative developments into healthcare tools and services based on genomics and bioinformatics applications. The conference is organised in collaboration with the University of Granada, Fundación Progreso y Salud (FPS) and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES). 2019-11-11 10:15:00 UTC 2019-11-12 16:00:00 UTC University of Granada, Fundación Progreso y Salud (FPS) and the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) Facultad de Medicina de la Universidad de Granada, 11, Avenida de la Investigación, Granada, Spain Facultad de Medicina de la Universidad de Granada, 11, Avenida de la Investigación Granada Spain Biomedical science Genomics Bioinformatics Translational medicine University of Granada [] ResearchersCliniciansDevelopersCompanies meetings_and_conferences [] Translational researchTranslational Bioinformaticsbiomedical applicationsBig DataPrecision MedicineGenomicsBioinformaticsClinical BioinformaticstoolsservicesHealthcareApplications
  • Assembly of long-read sequencing (2 days)

    12 - 13 November 2019

    Brisbane, Australia

    Assembly of long-read sequencing (2 days) https://tess.elixir-europe.org/events/assembly-of-long-read-sequencing-2-days-a1383ac8-7ceb-429e-9360-61be939cbcdb 2019-11-12 09:00:00 UTC 2019-11-13 17:00:00 UTC QFAB Brisbane, Australia Brisbane Australia Bioinformatics [] [] [] [] [] bioinformatics RNA-SeqGalaxy
  • Advances in Computational Biology Conference 2019

    28 - 29 November 2019

    Barcelona, Spain

    Elixir node event
    Advances in Computational Biology Conference 2019 https://tess.elixir-europe.org/events/advances-in-computational-biology-conference-2019 The first **Advances in Computational Biology conference – _Fostering collaboration among women scientists_** will bring together researchers working on systems biology, omics technologies, artificial intelligence and high-performance computing with applications to biology from both the public and private sectors. One of the main purposes of the conference is to **visualize and promote the research done by women scientists** and for this reason, all presenters will be women, although the conference is open to everyone. We want to create a space to foster collaborations between scientists, providing an excellent opportunity to share ideas and build research networks. Topics included: - **Learning from Biological Sequences**: population genomics, evolutionary genomics, systems biology, transcriptomics, sequence analysis - **When Computational Biology meets Medicine**: biomedical applications, mutational landscapes, clinical genomics - **Machines Speeding up Research**: high performance computing, machine learning in the life sciences, imaging data analysis, dynamic simulations and algorithm development Key dates: - Open registration: May 6th, 2019 - Abstract submission opens: May 6th, 2019 - **Abstract submission deadline: July 1st, 2019** - Early bird registration deadline: September 15th, 2019 - Registration deadline: November 1st, 2019 - AdvCompBio Conference: November 28th - 29th, 2019 The programme will include poster and oral presentations, as well as keynotes from leading scientists in the computational biology and high-performance computing fields. The keynote speakers of the conference are: **Christine Orengo**, group leader of Orengo Group at University College London, **Natasa Przulj**, group leader of the Life Sciences – Integrative Computational Network Biology at the Barcelona Supercomputing Center and **Marie-Christine Sawley**, director of the Exascale Lab at Intel. The confirmed chairs of the conference are: **Alison Kennedy**, director of the STFC Hartree Centre, **Janet Kelso**, group leader of the Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology, and **Nuria Lopez-Bigas**, leader of the Biomedical Genomics Research Group at the Institute for Research in Biomedicine Barcelona. Furthermore, the participants will have the opportunity to interact personally with female leaders in the fields of IT, academic research and politics that support the conference. The conference is organised by the Bioinfo4Women programme from the Barcelona Supercomputing Center (BSC-CNS) with the collaboration of IMIM-UPF Research Programme on Biomedical Informatics (GRIB), the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Universitat Politècnica de Catalunya (UPC). It is an affiliate conference of the International Society for Computational Biology (ISCB). 2019-11-28 09:00:00 UTC 2019-11-29 17:00:00 UTC La Pedrera, 92, Passeig de Gràcia, Barcelona, Spain La Pedrera, 92, Passeig de Gràcia Barcelona Barcelona Spain Imaging Machine learning Computational biology Computer science Biomedical science Sequence analysis Transcriptomics Evolutionary biology Population genomics Omics Systems biology Bioinformatics [] [] ResearchersPhD studentsPostdoctoral studentsComputer scienceComputational biologistsbioinformaticians meetings_and_conferences [] HPCBioinformaticsComputational BiologyArtificial IntelligenceGenomicsTranscriptomicsSystems biologyPopulation GenomicsEvolutinary genomicsSequence Analysisbiomedical applicationsmutational landscapesclinical genomicsImagingdynamic simulationsalgorithmsmachine learning
  • RNA-Seq using R (2 days - Knowledge of R required)

    3 - 4 December 2019

    Brisbane, Australia

    RNA-Seq using R (2 days - Knowledge of R required) https://tess.elixir-europe.org/events/analysis-of-ngs-data-workshops-advanced-393853d7-8b13-4f51-b774-afb159f5d818 2019-12-03 09:00:00 UTC 2019-12-04 17:00:00 UTC QFAB Translational Research Institute, 37, Kent Street, Brisbane, Australia Translational Research Institute, 37, Kent Street Brisbane Brisbane City Australia Bioinformatics [] [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introductory Linux Tutorial for Life Sciences 4

    10 - 12 December 2019

    Elixir node event
    Introductory Linux Tutorial for Life Sciences 4 https://tess.elixir-europe.org/events/introductory-linux-tutorial-for-life-sciences-4 NBIS (the Swedish node of ELIXIR) and ELIXIR Slovenia are offering an "Introduction to Linux" course targeted at life scientists who want to extend their skills and knowledge. Big data (usually in the form of large text files) are generated nowadays in many fields of science. Trying to handle this data with applications like Word or Excel is difficult or impossible, while using the Linux command line can improve data processing efficiency. Unix/Linux provides an excellent computing environment for several disciplines (such as bioinformatics, physics, engineering) and the command line interpreter (shell) serves as an interface to many big-data processing programs. The course provides a basic introduction to Unix/Linux commands and covers how Unix/Linux commands can be used to manage and inspect your data and results, and how to generate and run pipelines and workflows using basic shell scripting. Finally, we will show you how the command line is used for access to supercomputers for boosting your scientific research. Participants will be able to attend the course either by traveling to Stockholm or to Umeå in Sweden, to Ljubljana in Slovenia, or by connecting remotely via the ELIXIR Slovenia eLearning Platform (EeLP). The number of remote students is limited to 30. The number of students per classroom is limited to 15 for Stockholm and Umeå, and 20 for Ljubljana. Additional participants will be placed on a waiting list and contacted as soon as space becomes available. The course will be broadcast from Sweden. 2019-12-10 09:00:00 UTC 2019-12-12 17:00:00 UTC ELIXIR Sweden (NBIS) and ELIXIR Slovenia Bioinformatics Computer science NBISUniversity of Ljubljana, Faculty of Medicine [] Life Science ResearchersbioinformaticiansBiophysicistsengineers [] [] life sciences LinuxUnixEeLPeLearningCommand line
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