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  • ELIXIR Software Carpentry - Ljubljana

    16 - 17 May 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Software Carpentry - Ljubljana **ELIXIR Software Carpentry - Ljubljana** **16-17 May 2019, Faculty of Medicine,** **Vrazov trg 2, Ljubljana (Slovenia)** ELIXIR Software Carpentry is a workshop intended for all those who would like to learn more about the basics of R - software environment used in bioinformatics for statistical computing and graphics. The workshop will include a keynote lecture about data management in ELIXIR-SI. The workshop will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The course is free of charge. The limit of participants is 20.** If the number of registered applicants exceeds this limit, selection of participants will be made. It will be based on the time of their registration and their affiliations, as well as geographic distribution. Sessions will be intensive and hands-on, and taught by experienced software carpentry instructors. The course is recommended for anyone who would like to learn more about using statistical computing and graphics in the bioinformatics field, both for research or operational work. **Program topics:** - Keynote lecture about ELIXIR-SI data management - Introduction to Linux/Unix command line - Git - R **The course is organised by ELIXIR Slovenia in collaboration with Data & Software Carpentry.** More info about the course is available on the **[ELIXIR-SI eLearning Platform (EeLP)](**. 2019-05-16 09:00:00 UTC 2019-05-17 16:00:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia Ljubljana Central Slovenia Slovenia SI-1000 Statistics and probability Data management Computer science University of Ljubljana, Faculty of Medicine Data & Software Carpentry Life Science ResearchersBeginners in statisticsPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearningStatistics R-programmingSoftware Carpentry
  • RepeatExplorer Workshop

    21 - 23 May 2019

    České Budějovice, Czechia

    Elixir node event
    RepeatExplorer Workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2019-05-21 09:00:00 UTC 2019-05-23 18:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia Institute of Plant Molecular Biology, České Budějovice, Czech Republic [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served next generation sequencingNext generation sequencing data analysisGalaxyRepetitive DNA Analysis
  • Genome assembly and annotation course 5

    1 - 5 July 2019

    Milan, Italy

    Elixir node event
    Genome assembly and annotation course 5 A **genome assembly and annotation course** will take place on **July 1-5, 2019** in **Milan, Italy**, hosted by the Italian ELIXIR Node in cooperation with other ELIXIR nodes that are involved in the ELIXIR-EXCELERATE task 10.3 “Capacity Building in Genome Assembly and Annotation”. Some of the most experienced assembly and annotation experts in Europe will be teaching at the course. The course is aimed at researchers interested in learning more about genome assembly and annotation. It will include information useful for both the beginner and the more advanced user. We will start by introducing general concepts and then continue with a step-by-step description of all major components of a genome assembly and annotation workflow, from raw data all the way to a final assembled and annotated genome. There will be a mix of lectures and hands-on practical exercises using Unix/Linux command line. After the course, the participants will have knowledge of commonly used assembly practices and tools. They will be able to run assembly and annotation projects on their own. **Prerequisites:** - **Working knowledge of Unix/Linux command line** - **As part of the course agenda, course participants will prepare a short presentation about their own projects.** Optionally, they may also bring their own data. **Instructions how to register for the course are available on the [ELIXIR-SI eLearning Platform (EELP)](** You will be able to access the course after you register and your registration is approved by the course organizers. 2019-07-01 09:00:00 UTC 2019-07-05 17:00:00 UTC ELIXIR Italy University of Milano-Bicocca, Building U7, Lab 715, Milan, Italy University of Milano-Bicocca, Building U7, Lab 715 Milan Città Metropolitana di Milano Italy Genomics University of Milano-Bicocca, Italy General questions: Questions about the course agenda: National Research Council of ItalyINRANBIS - National Bioinformatics Infrastructure SwedenELIXIR EXCELERATE life scientistsResearchersPhD students 24 workshops_and_courses registration_of_interest Genomics AssemblyTrainingeLearningEeLP
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