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  • Introduction to Linux and HPC for biologists

    30 October 2019

    Melbourne, Australia

    Introduction to Linux and HPC for biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-hpc-for-biologists-e3dd792c-1b9d-4539-96ba-53226bc84a38 2019-10-30 01:00:00 UTC 2019-10-30 17:00:00 UTC Melbourne Bioinformatics University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia 3053 Bioinformatics University of Melbourne [] [] [] [] bioinformaticsHPClinux
  • Advanced Linux and Shell Scripting for biologists

    31 October 2019

    Melbourne, Australia

    Advanced Linux and Shell Scripting for biologists https://tess.elixir-europe.org/events/advanced-linux-and-shell-scripting-for-biologists-ab563b04-f224-494d-a7cd-283d078a1f92 2019-10-31 01:00:00 UTC 2019-10-31 17:00:00 UTC Melbourne Bioinformatics Room 355 Arts West North Wing Professors Walk, Melbourne, Australia Room 355 Arts West North Wing Professors Walk Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticslinuxShell script
  • NBIS Course: R programming for Life Scientists

    11 - 16 November 2019

    Uppsala, Sweden

    Elixir node event
    NBIS Course: R programming for Life Scientists https://tess.elixir-europe.org/events/nbis-course-r-programming-for-life-scientists #training #url: https://nbisweden.github.io/workshop-r-1911/ 2019-11-11 - 2019-11-15, Course | Uppsala R programming foundations for Life Science Links: Course: https://nbisweden.github.io/workshop-r-1911/ Registration form: https://squery.typeform.com/to/XMwVk1  The course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting emphasizing the parts useful for life scientists. After introductory lectures on good programming practices, basic software design theory and a brief overview of R, we will delve into programming. We will give you tools to access help and information on R-related challenges and issues, spend some time learning how to install external packages, how to find bugs and address common installation issues. The course will be given by experienced computational biologists from SciLifeLab and Uppsala University. Important dates:  application deadline -- October 20,  acceptance notification — October 25. contact: education@nbis.se 2019-11-11 09:00:00 UTC 2019-11-16 00:00:00 UTC Uppsala, Sweden Uppsala Sweden [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • NBIS Course: R programming for Life Scientists

    11 - 16 November 2019

    Uppsala, Sweden

    Elixir node event
    NBIS Course: R programming for Life Scientists https://tess.elixir-europe.org/events/nbis-course-r-programming-for-life-scientists-0f47ae33-6003-48ab-b642-c11efbe7fd19 #training #url: https://www.scilifelab.se/events/r-foundations-for-life-scientists/  #url: https://nbisweden.github.io/workshop-r-1911/ 2019-11-11 - 2019-11-15, Course | Uppsala R programming foundations for Life Science Links: Course: https://nbisweden.github.io/workshop-r-1911/ Registration form: https://squery.typeform.com/to/XMwVk1  The course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting emphasizing the parts useful for life scientists. After introductory lectures on good programming practices, basic software design theory and a brief overview of R, we will delve into programming. We will give you tools to access help and information on R-related challenges and issues, spend some time learning how to install external packages, how to find bugs and address common installation issues. The course will be given by experienced computational biologists from SciLifeLab and Uppsala University. Important dates:  application deadline -- October 20,  acceptance notification — October 25. contact: education@nbis.se 2019-11-11 09:00:00 UTC 2019-11-16 00:00:00 UTC Uppsala, Sweden Uppsala Sweden [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • Introduction to Bioinformatics using NGS data, Lund

    25 - 29 November 2019

    Lund, Sweden

    Elixir node event
    Introduction to Bioinformatics using NGS data, Lund https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-lund #training #url: https://www.scilifelab.se/events/introduction-to-bioinformatics-using-ngs-data-lund/ More information will follow: https://www.scilifelab.se/education/courses%26training questions? mail education@nbis.se 2019-11-25 09:00:00 UTC 2019-11-29 00:00:00 UTC Lund, Sweden Lund Sweden [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] #trainingtraining
  • RNA-Seq

    26 - 28 November 2019

    Lund, Sweden

    Elixir node event
    RNA-Seq https://tess.elixir-europe.org/events/rna-seq-eeffa88f-ba9a-4512-a44d-e29b6be6394f #training #url: https://www.scilifelab.se/events/rna-seq-3/ More information will follow: https://www.scilifelab.se/education/courses%26training questions? mail education@nbis.se 2019-11-26 09:00:00 UTC 2019-11-28 00:00:00 UTC Lund, Sweden Lund Sweden [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] #trainingtraining
  • Advances in Computational Biology Conference 2019

    28 - 29 November 2019

    Barcelona, Spain

    Elixir node event
    Advances in Computational Biology Conference 2019 https://tess.elixir-europe.org/events/advances-in-computational-biology-conference-2019 The first **Advances in Computational Biology conference – _Fostering collaboration among women scientists_** will bring together researchers working on systems biology, omics technologies, artificial intelligence and high-performance computing with applications to biology from both the public and private sectors. One of the main purposes of the conference is to **visualize and promote the research done by women scientists** and for this reason, all presenters will be women, although the conference is open to everyone. We want to create a space to foster collaborations between scientists, providing an excellent opportunity to share ideas and build research networks. Topics included: - **Learning from Biological Sequences**: population genomics, evolutionary genomics, systems biology, transcriptomics, sequence analysis - **When Computational Biology meets Medicine**: biomedical applications, mutational landscapes, clinical genomics - **Machines Speeding up Research**: high performance computing, machine learning in the life sciences, imaging data analysis, dynamic simulations and algorithm development Key dates: - Open registration: May 6th, 2019 - Abstract submission opens: May 6th, 2019 - **Abstract submission deadline: July 1st, 2019** - Early bird registration deadline: September 15th, 2019 - Registration deadline: November 1st, 2019 - AdvCompBio Conference: November 28th - 29th, 2019 The programme will include poster and oral presentations, as well as keynotes from leading scientists in the computational biology and high-performance computing fields. The keynote speakers of the conference are: **Christine Orengo**, group leader of Orengo Group at University College London, **Natasa Przulj**, group leader of the Life Sciences – Integrative Computational Network Biology at the Barcelona Supercomputing Center and **Marie-Christine Sawley**, director of the Exascale Lab at Intel. The confirmed chairs of the conference are: **Alison Kennedy**, director of the STFC Hartree Centre, **Janet Kelso**, group leader of the Minerva Research Group for Bioinformatics at the Max Planck Institute for Evolutionary Anthropology, and **Nuria Lopez-Bigas**, leader of the Biomedical Genomics Research Group at the Institute for Research in Biomedicine Barcelona. Furthermore, the participants will have the opportunity to interact personally with female leaders in the fields of IT, academic research and politics that support the conference. The conference is organised by the Bioinfo4Women programme from the Barcelona Supercomputing Center (BSC-CNS) with the collaboration of IMIM-UPF Research Programme on Biomedical Informatics (GRIB), the Spanish National Bioinformatics Institute (INB/ELIXIR-ES) and the Universitat Politècnica de Catalunya (UPC). It is an affiliate conference of the International Society for Computational Biology (ISCB). 2019-11-28 09:00:00 UTC 2019-11-29 17:00:00 UTC La Pedrera, 92, Passeig de Gràcia, Barcelona, Spain La Pedrera, 92, Passeig de Gràcia Barcelona Barcelona Spain Imaging Machine learning Computational biology Computer science Biomedical science Sequence analysis Transcriptomics Evolutionary biology Population genomics Omics Systems biology Bioinformatics [] [] ResearchersPhD studentsPostdoctoral studentsComputer scienceComputational biologistsbioinformaticians meetings_and_conferences [] HPCBioinformaticsComputational BiologyArtificial IntelligenceGenomicsTranscriptomicsSystems biologyPopulation GenomicsEvolutinary genomicsSequence Analysisbiomedical applicationsmutational landscapesclinical genomicsImagingdynamic simulationsalgorithmsmachine learning
  • NBIS course: Introductory Linux Tutorial for Life Sciences

    10 - 13 December 2019

    classrooms in Stockholm

    Elixir node event
    NBIS course: Introductory Linux Tutorial for Life Sciences https://tess.elixir-europe.org/events/nbis-course-introductory-linux-tutorial-for-life-sciences #training #url: https://linux2019.eventbrite.co.uk Course announcement and information: https://www.scilifelab.se/events/introductory-linux-tutorial-for-life-sciences/ Remote participants & classrooms in Stockholm, Umeå and Ljubljana Course leaders: Mihaela Martis-Thiele & Jeanette Tångrot 2019-12-10 09:00:00 UTC 2019-12-13 00:00:00 UTC classrooms in Stockholm classrooms in Stockholm [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • NBIS Course: Single cell RNA sequencing analysis course

    27 - 31 January 2020

    Solna, Sweden

    Elixir node event
    NBIS Course: Single cell RNA sequencing analysis course https://tess.elixir-europe.org/events/nbis-course-single-cell-rna-sequencing-analysis-course #training #url: https://nbisweden.github.io/workshop-scRNAseq/ Single cell RNA sequencing analysis course Links:  Course: https://nbisweden.github.io/workshop-scRNAseq/ Registration form: https://forms.gle/6VFVTFep6iYk7wLr9 The first 3 days of the course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include: An overview of the current scRNAseq technologies Basic overview of pipelines for processing raw reads into expression values Quality control of scRNAseq data Dimensionality reduction and clustering techniques Data normalization Differential gene expression for scRNAseq data Trajectory analysis Comparison of different analysis pipelines such as Seurat, Scran and Scanpy On the fourth day we offer a “Bring your own data” day where you can analyse your data using the tools that you have discovered during the course, with TAs present to help you run the analyses and discuss your results. If you do not have your own data you can still select a public dataset of interest and analyse during that day. Application deadline -- December 16 Acceptance notification — December 20 contact: education@nbis.se 2020-01-27 09:00:00 UTC 2020-01-31 00:00:00 UTC Solna, Sweden Solna Sweden [] Åsa Björklund - asa.bjorklund@scilifelab.se [] [] [] [] #trainingtraining
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